Os08g0255500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0255500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.47 | 0.371 | 8.48 | -0.366 | 0.213 | 0.48 | 0.35 | 0.634 | 0.264 | 18.9 | 30.7 | 993 | -- | -- |
| 62.3 | 0.368 | 8.47 | -0.27 | 0.212 | 0.562 | 0.366 | -- | 0.262 | 19 | 30.33 | 987 | -- | -- |
| 62.65 | 0.369 | 8.48 | -0.372 | 0.21 | 0.463 | -- | 0.626 | 0.265 | 18.5 | 30.55 | 1011 | -- | -- |
| 62.58 | 0.368 | 8.47 | -0.275 | 0.216 | 0.541 | -- | -- | 0.268 | 18.5 | 30.35 | 1005 | -- | -- |
| 64.29 | 0.373 | 8.48 | -0.39 | -- | 0.399 | -- | 0.636 | 0.257 | -- | 30.6 | 1152 | -- | -- |
| 73.22 | 0.401 | 8.44 | -0.401 | 0.186 | -- | 0.0553 | -- | 0.356 | 16.9 | -- | -- | -- | -- |
| 73.23 | 0.401 | 8.44 | -0.401 | 0.186 | -- | -- | -- | 0.356 | 16.8 | -- | -- | -- | -- |
| 64.41 | 0.374 | 8.45 | -0.263 | -- | 0.491 | -- | -- | 0.283 | -- | 30.4 | 1138 | -- | -- |
| 64.49 | 0.374 | 8.46 | -- | 0.218 | 0.579 | -- | -- | 0.289 | 18.6 | 30.31 | 1018 | -- | -- |
| 75.07 | 0.405 | 8.44 | -0.408 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 77.46 | 0.412 | 8.43 | -- | 0.194 | -- | -- | -- | 0.401 | 16.7 | -- | -- | -- | -- |
| 66.29 | 0.379 | 8.46 | -- | -- | 0.504 | -- | -- | 0.291 | -- | 30.4 | 1155 | -- | -- |
| 79.45 | 0.416 | 8.43 | -- | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.84 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 2 | 61.87 | humidity | 90 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 3 | 61.89 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 14 |
| 9 | 62.05 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 15 | 62.19 | humidity | 70 | 270 | > th | dose independent | rect. | 14 | 11 |
| 17 | 62.19 | humidity | 90 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 21 | 62.24 | humidity | 90 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 33 | 62.35 | temperature | 30 | 720 | < th | dose independent | sin | 17 | NA |
| 39 | 62.38 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 21 |
| 47 | 62.47 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 48 | 62.47 | humidity | 90 | 270 | < th | dose dependent | sin | 17 | NA |
| 50 | 62.47 | humidity | 50 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 58 | 62.53 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 17 |
| 66 | 62.56 | humidity | 70 | 270 | > th | dose independent | sin | 16 | NA |
| 68 | 62.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 70 | 62.58 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 71 | 62.58 | humidity | 70 | 10 | > th | dose dependent | sin | 16 | NA |
| 77 | 62.60 | humidity | 50 | 270 | > th | dose dependent | sin | 18 | NA |
| 87 | 62.62 | temperature | 30 | 720 | > th | dose independent | sin | 17 | NA |
| 90 | 62.62 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 96 | 62.64 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 99 | 62.65 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 5 |
| 120 | 62.67 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 21 |
| 125 | 62.69 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 23 |
| 133 | 62.71 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 134 | 62.71 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 16 |
| 148 | 62.73 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 172 | 62.79 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 236 | 62.87 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 14 |
| 255 | 62.88 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 366 | 63.05 | humidity | 70 | 270 | < th | dose independent | sin | 15 | NA |
| 373 | 63.05 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 383 | 63.07 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 22 |
| 432 | 63.14 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 455 | 63.17 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 12 |
| 457 | 63.18 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 584 | 63.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 595 | 63.27 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 23 |
| 619 | 63.32 | humidity | 70 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 645 | 63.37 | temperature | 30 | 720 | > th | dose dependent | sin | 16 | NA |
| 668 | 63.41 | humidity | 80 | 270 | < th | dose independent | rect. | 12 | 8 |
| 684 | 63.42 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 688 | 63.42 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 731 | 63.49 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 813 | 63.56 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 21 |
| 838 | 63.57 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 856 | 63.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 879 | 63.61 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |