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Os08g0249900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0447) R2 : 0.526
β1 : 1.15 (0.164) R2dD : 0.0541 R2D : -0.028
β2 : 2.11 (0.12) R2dC : 0.356 R2C : 0.168
β3 : 1.71 (0.144) R2dE : 0.175 R2E : 0.0476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.875 (0.0977) R2dN8 : 0.119 R2N8 : 0.121
σ : 0.83
deviance : 317.46
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_____
C
peak time of C : 16.6
E
wheather : humidity
threshold : 89.36
memory length : 49
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.06
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.37 0.83 10.6 1.14 2.13 1.75 -1.45 -0.611 0.872 16.4 89.72 48 3.24 --
312.99 0.824 10.6 1.17 2.12 1.77 -1.31 -- 0.867 16.5 89 49 3.19 --
317.43 0.83 10.6 1.14 2.11 1.7 -- -0.135 0.874 16.6 89.33 49 3.08 --
317.46 0.83 10.6 1.15 2.11 1.71 -- -- 0.875 16.6 89.36 49 3.06 --
399.02 0.935 10.6 0.963 -- 1.66 -- -0.927 1.04 -- 92 3 11.5 --
413.04 0.953 10.6 0.909 1.72 -- -0.362 -- 1.16 17 -- -- -- --
413.37 0.952 10.6 0.908 1.71 -- -- -- 1.15 17 -- -- -- --
397.36 0.928 10.6 0.99 -- 1.68 -- -- 1.06 -- 91 2 12.2 --
351.71 0.873 10.7 -- 2.06 1.59 -- -- 0.782 16.7 90 48 2.94 --
567.45 1.11 10.6 0.846 -- -- -- -- 1.11 -- -- -- -- --
435.11 0.976 10.6 -- 1.7 -- -- -- 1.05 17 -- -- -- --
423.63 0.962 10.6 -- -- 1.64 -- -- 0.95 -- 91.85 2 12.3 --
586.35 1.13 10.6 -- -- -- -- -- 1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.78 temperature 20.0 90 > th dose independent rect. 1 4
3 317.52 humidity 90.0 30 < th dose independent rect. 20 12
4 317.65 temperature 15.0 270 > th dose independent rect. 3 22
5 317.89 humidity 90.0 30 < th dose independent sin 9 NA
7 318.92 humidity 90.0 90 < th dose independent rect. 20 15
11 319.34 temperature 15.0 270 > th dose independent rect. 4 20
12 319.74 humidity 90.0 270 < th dose independent rect. 18 6
13 319.89 humidity 90.0 30 < th dose independent rect. 20 19
17 320.43 humidity 90.0 30 < th dose independent rect. 20 17
22 321.29 temperature 15.0 90 > th dose dependent rect. 2 3
25 322.51 radiation 1.0 90 < th dose dependent rect. 1 18
38 324.27 humidity 90.0 90 < th dose independent rect. 5 20
50 324.92 humidity 80.0 90 > th dose independent rect. 1 4
57 325.65 temperature 15.0 270 > th dose independent rect. 17 7
64 326.48 radiation 1.0 90 < th dose dependent sin 3 NA
75 327.68 humidity 80.0 270 > th dose independent rect. 1 2
78 327.94 humidity 70.0 90 > th dose dependent rect. 1 4
83 328.27 radiation 1.0 90 < th dose dependent rect. 1 7
86 328.51 precipitation 0.1 270 < th dose independent rect. 3 22
88 328.51 precipitation 0.1 270 < th dose dependent rect. 3 22
98 328.78 radiation 1.0 90 < th dose independent rect. 1 18
110 329.37 precipitation 0.1 90 < th dose independent rect. 5 20
111 329.37 precipitation 0.1 90 < th dose dependent rect. 5 20
116 329.55 temperature 15.0 270 > th dose independent rect. 19 14
117 329.56 radiation 1.0 90 < th dose independent rect. 1 7
140 330.32 radiation 1.0 720 > th dose independent rect. 11 6
163 331.00 radiation 1.0 90 < th dose independent rect. 1 16
175 331.52 temperature 15.0 10 > th dose independent rect. 20 6
177 331.73 humidity 80.0 90 > th dose dependent rect. 17 12
183 331.91 radiation 1.0 720 < th dose dependent rect. 23 19
204 332.92 humidity 90.0 270 < th dose dependent rect. 19 5
211 333.17 humidity 60.0 270 > th dose dependent rect. 1 2
235 334.06 radiation 1.0 90 < th dose independent sin 3 NA
246 334.24 wind 9.0 90 < th dose independent rect. 1 4
247 334.25 humidity 80.0 30 > th dose dependent sin 9 NA
252 334.29 temperature 10.0 90 > th dose independent rect. 1 4
254 334.29 temperature 30.0 90 < th dose independent rect. 1 4
255 334.29 humidity 50.0 90 > th dose independent rect. 1 4
258 334.29 atmosphere 995.0 90 > th dose independent rect. 1 4
259 334.29 atmosphere 1010.0 90 < th dose independent rect. 1 4
261 334.29 radiation 20.0 90 < th dose independent rect. 1 4
274 334.47 humidity 90.0 30 > th dose independent sin 9 NA
275 334.52 wind 9.0 90 < th dose dependent rect. 1 4
281 334.63 atmosphere 995.0 90 > th dose independent rect. 5 20
284 334.70 radiation 1.0 30 > th dose independent sin 2 NA
332 335.30 humidity 90.0 30 < th dose independent rect. 16 23
333 335.31 humidity 90.0 30 > th dose independent rect. 18 16
355 335.78 wind 3.0 90 < th dose independent rect. 1 4
382 336.15 wind 9.0 90 < th dose independent rect. 5 20
394 336.29 precipitation 0.1 270 < th dose independent rect. 1 2
395 336.29 precipitation 0.1 270 < th dose dependent rect. 1 2
408 336.47 humidity 90.0 270 < th dose dependent rect. 19 13
431 337.02 precipitation 0.1 90 < th dose independent rect. 1 4
432 337.02 radiation 10.0 10 < th dose dependent rect. 2 4
433 337.02 precipitation 0.1 90 < th dose dependent rect. 1 4
441 337.09 wind 9.0 270 < th dose dependent rect. 1 2
458 337.50 atmosphere 995.0 90 > th dose dependent rect. 2 3
467 337.75 humidity 90.0 30 > th dose independent rect. 18 12
484 338.00 wind 3.0 270 < th dose independent rect. 1 2
504 338.17 radiation 1.0 720 > th dose independent rect. 11 20
539 338.76 humidity 80.0 10 > th dose independent rect. 2 4
571 339.13 humidity 90.0 90 < th dose independent no NA NA
573 339.26 wind 1.0 90 > th dose independent rect. 5 21
599 339.75 radiation 1.0 270 < th dose independent rect. 23 19
719 341.41 wind 9.0 270 < th dose independent rect. 3 22
759 341.86 humidity 70.0 10 > th dose dependent rect. 1 5
784 341.92 humidity 90.0 30 < th dose independent rect. 9 23
820 342.33 humidity 50.0 90 > th dose independent rect. 5 21
837 342.49 radiation 1.0 270 < th dose dependent rect. 23 9
871 343.00 radiation 1.0 270 < th dose independent rect. 23 9
911 343.26 wind 9.0 1440 < th dose independent rect. 3 3
912 343.26 temperature 10.0 1440 > th dose independent rect. 3 3
915 343.26 temperature 30.0 1440 < th dose independent rect. 3 3
919 343.26 humidity 50.0 1440 > th dose independent rect. 3 3
928 343.26 atmosphere 995.0 1440 > th dose independent rect. 3 3
929 343.26 radiation 20.0 1440 < th dose independent rect. 3 3
940 343.26 temperature 10.0 1440 > th dose independent rect. 6 21
1000 343.86 wind 9.0 90 < th dose dependent rect. 15 14