Os08g0249400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0249400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.98 | 0.27 | 11.8 | 0.334 | 0.373 | 0.922 | -0.0722 | 0.452 | 0.407 | 15.6 | 78.99 | 1334 | -- | -- |
| 33.15 | 0.268 | 11.8 | 0.371 | 0.372 | 0.947 | -0.0396 | -- | 0.413 | 15.6 | 78.76 | 1330 | -- | -- |
| 32.99 | 0.268 | 11.8 | 0.334 | 0.371 | 0.92 | -- | 0.433 | 0.406 | 15.6 | 79 | 1330 | -- | -- |
| 33.16 | 0.268 | 11.8 | 0.37 | 0.372 | 0.945 | -- | -- | 0.414 | 15.6 | 78.69 | 1330 | -- | -- |
| 39.16 | 0.291 | 11.8 | 0.335 | -- | 1.04 | -- | 0.517 | 0.404 | -- | 77.4 | 1244 | -- | -- |
| 44.38 | 0.312 | 11.8 | 0.321 | 0.454 | -- | 0.0791 | -- | 0.369 | 15.4 | -- | -- | -- | -- |
| 44.4 | 0.312 | 11.8 | 0.323 | 0.454 | -- | -- | -- | 0.369 | 15.4 | -- | -- | -- | -- |
| 39.4 | 0.292 | 11.8 | 0.386 | -- | 1.06 | -- | -- | 0.414 | -- | 77.67 | 1244 | -- | -- |
| 36.73 | 0.282 | 11.8 | -- | 0.401 | 0.926 | -- | -- | 0.374 | 15.3 | 78 | 1380 | -- | -- |
| 55.98 | 0.35 | 11.8 | 0.304 | -- | -- | -- | -- | 0.357 | -- | -- | -- | -- | -- |
| 47.14 | 0.321 | 11.8 | -- | 0.448 | -- | -- | -- | 0.333 | 15.4 | -- | -- | -- | -- |
| 42.96 | 0.305 | 11.8 | -- | -- | 1.03 | -- | -- | 0.374 | -- | 78.03 | 1248 | -- | -- |
| 58.41 | 0.357 | 11.8 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 3 | 33.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 5 | 33.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 6 | 33.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 22 |
| 14 | 33.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 23 | 33.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 51 | 33.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 53 | 33.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 72 | 33.74 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 94 | 33.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 106 | 33.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 108 | 33.85 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 119 | 33.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 122 | 33.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 127 | 33.92 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 131 | 33.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 133 | 33.92 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 148 | 33.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 151 | 33.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 163 | 33.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 183 | 34.03 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 202 | 34.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 289 | 34.18 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 307 | 34.20 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 344 | 34.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 361 | 34.27 | humidity | 50 | 720 | > th | dose dependent | sin | 13 | NA |
| 388 | 34.30 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 390 | 34.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 548 | 34.51 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 601 | 34.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 606 | 34.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 667 | 34.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 862 | 34.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 897 | 34.92 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 907 | 34.93 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 950 | 34.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 963 | 34.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 978 | 35.00 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |