Os08g0249100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UspA domain containing protein.
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Os08g0249100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UspA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.38 | 0.683 | 6.9 | -3.19 | 2.18 | 2.92 | -1.16 | -3.21 | -0.384 | 11.4 | 20.62 | 1387 | -- | -- |
| 219.23 | 0.69 | 6.8 | -2.33 | 2.21 | 2.89 | -0.918 | -- | -0.147 | 11.4 | 19.3 | 1363 | -- | -- |
| 216.93 | 0.686 | 6.9 | -3.18 | 2.22 | 2.92 | -- | -3.03 | -0.371 | 11.4 | 20.71 | 1356 | -- | -- |
| 223.35 | 0.696 | 6.79 | -2.33 | 2.26 | 2.93 | -- | -- | -0.142 | 11.5 | 19.39 | 1314 | -- | -- |
| 410.46 | 0.949 | 6.91 | -2.78 | -- | 3.74 | -- | -4.6 | -0.283 | -- | 20.2 | 1574 | -- | -- |
| 458.88 | 1 | 6.64 | -1.23 | 2 | -- | -1.15 | -- | 0.526 | 11.1 | -- | -- | -- | -- |
| 464.53 | 1.01 | 6.65 | -1.28 | 2.01 | -- | -- | -- | 0.522 | 11.1 | -- | -- | -- | -- |
| 407.48 | 0.944 | 6.83 | -2.17 | -- | 4.53 | -- | -- | -0.11 | -- | 14.9 | 1595 | -- | -- |
| 344.76 | 0.865 | 6.7 | -- | 2.3 | 2.15 | -- | -- | 0.268 | 11.5 | 21.51 | 1251 | -- | -- |
| 716.18 | 1.25 | 6.7 | -1.33 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 507.76 | 1.05 | 6.61 | -- | 2.02 | -- | -- | -- | 0.664 | 11.1 | -- | -- | -- | -- |
| 524.15 | 1.07 | 6.76 | -- | -- | 3.86 | -- | -- | 0.207 | -- | 14.9 | 1595 | -- | -- |
| 762.62 | 1.29 | 6.66 | -- | -- | -- | -- | -- | 0.653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 9 | 209.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 27 | 210.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 89 | 212.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 92 | 213.01 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 213.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 110 | 213.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 264 | 218.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 466 | 221.14 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 469 | 221.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 751 | 223.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 810 | 223.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 838 | 224.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 882 | 224.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 886 | 225.03 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 911 | 225.28 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 925 | 225.41 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 926 | 225.41 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 929 | 225.43 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 953 | 225.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 15 |
| 954 | 225.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 959 | 225.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |