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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0248700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Blind.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0453) R2 : 0.0805
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.3 (0.693) R2dE : 0.0776 R2E : 0.0745
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0954) R2dN8 : 0.00601 R2N8 : 0.00287
σ : 0.85
deviance : 333.27
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 10.3
memory length : 46
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326 0.848 3.13 0.219 0.29 4.76 -0.608 6.32 0.163 9.31 10.12 19 -- --
326.16 0.841 3.12 0.19 0.321 4.77 -0.62 -- 0.168 9.63 10.3 46 -- --
325.74 0.841 3.15 0.205 0.261 9.79 -- 20.6 0.131 9.26 10.28 28 -- --
327.39 0.843 3.11 0.159 0.305 4.4 -- -- 0.171 9.34 10.3 46 -- --
330.12 0.846 3.15 0.291 -- 11 -- 24.4 0.157 -- 10.3 28 -- --
354.59 0.883 3.13 0.0677 0.287 -- -0.604 -- 0.124 10.6 -- -- -- --
356.08 0.884 3.13 0.0426 0.292 -- -- -- 0.122 10.4 -- -- -- --
332.78 0.85 3.13 0.148 -- 4.35 -- -- 0.162 -- 10.3 46 -- --
327.89 0.843 3.12 -- 0.31 4.33 -- -- 0.144 9.31 10.3 46 -- --
361.3 0.888 3.14 0.0378 -- -- -- -- 0.121 -- -- -- -- --
356.13 0.883 3.13 -- 0.292 -- -- -- 0.117 10.4 -- -- -- --
333.27 0.85 3.13 -- -- 4.3 -- -- 0.144 -- 10.3 46 -- --
361.34 0.887 3.14 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.67 atmosphere 1000 90 < th dose dependent rect. 23 3
14 322.13 atmosphere 1000 90 < th dose dependent rect. 24 1
19 323.68 atmosphere 1000 270 < th dose dependent rect. 22 1
20 323.77 atmosphere 1000 10 < th dose independent rect. 1 1
45 327.26 temperature 25 90 > th dose dependent rect. 1 1
47 327.51 temperature 25 90 > th dose dependent rect. 23 3
50 328.08 temperature 25 10 > th dose dependent rect. 24 3
54 328.39 atmosphere 995 720 < th dose independent rect. 14 1
95 328.39 atmosphere 995 720 < th dose dependent rect. 14 1
137 328.67 temperature 25 90 > th dose independent rect. 1 1
157 329.24 atmosphere 1000 270 < th dose independent rect. 22 1
164 329.44 humidity 90 90 < th dose independent rect. 1 1
177 329.95 wind 7 30 > th dose dependent rect. 14 3
178 329.97 atmosphere 995 720 > th dose independent sin 6 NA
183 330.27 wind 9 10 > th dose independent rect. 15 1
204 330.51 atmosphere 995 720 < th dose independent sin 6 NA
206 330.57 wind 9 30 > th dose dependent rect. 10 6
263 332.03 atmosphere 995 720 < th dose dependent sin 7 NA
297 333.72 humidity 90 90 < th dose dependent rect. 24 2
340 334.69 humidity 90 10 < th dose independent rect. 1 1
351 335.11 wind 9 30 > th dose independent rect. 10 6
389 335.63 wind 9 30 > th dose dependent sin 23 NA
398 335.77 wind 9 30 < th dose independent sin 0 NA
401 335.80 temperature 20 720 > th dose dependent rect. 3 2
405 335.86 wind 9 30 > th dose dependent rect. 15 21
413 335.90 atmosphere 1005 90 > th dose independent rect. 15 1
417 336.08 wind 5 90 < th dose independent rect. 3 18
423 336.11 wind 1 43200 < th dose dependent rect. 7 1
457 336.30 wind 9 30 < th dose independent no NA NA
460 336.35 radiation 20 1440 > th dose independent rect. 16 1
486 336.61 wind 5 90 < th dose independent rect. 3 12
489 336.64 humidity 60 43200 < th dose independent rect. 8 4
501 336.73 humidity 60 43200 < th dose dependent rect. 18 22
502 336.74 radiation 10 4320 < th dose dependent rect. 16 14
503 336.74 temperature 10 90 > th dose dependent rect. 3 20
521 336.81 temperature 15 10 > th dose dependent rect. 4 18
525 336.83 radiation 10 4320 < th dose dependent rect. 15 16
532 336.87 humidity 60 43200 < th dose dependent rect. 8 8
537 336.90 humidity 60 43200 < th dose dependent rect. 10 6
551 336.97 humidity 60 43200 < th dose independent rect. 19 17
563 337.02 humidity 60 43200 < th dose dependent sin 3 NA
575 337.06 wind 9 30 > th dose independent rect. 15 21
594 337.14 radiation 10 4320 < th dose dependent rect. 17 12
649 337.26 radiation 10 4320 < th dose dependent sin 13 NA
657 337.27 temperature 10 720 > th dose dependent rect. 2 11
687 337.33 humidity 60 43200 > th dose independent rect. 8 4
693 337.33 humidity 60 43200 < th dose dependent rect. 14 23
720 337.41 atmosphere 995 720 > th dose independent sin 20 NA
746 337.43 radiation 30 4320 < th dose dependent rect. 16 14
754 337.44 radiation 40 4320 < th dose dependent rect. 18 5
763 337.48 humidity 60 43200 < th dose dependent rect. 8 15
766 337.48 humidity 60 43200 < th dose dependent rect. 8 19
767 337.49 atmosphere 995 720 > th dose independent no NA NA
806 337.54 wind 5 90 > th dose independent rect. 8 9
810 337.54 radiation 1 4320 > th dose dependent rect. 16 14
825 337.55 humidity 60 43200 > th dose independent rect. 9 2
828 337.55 humidity 60 43200 < th dose dependent no NA NA
829 337.55 humidity 70 43200 < th dose dependent rect. 8 2
863 337.58 atmosphere 1005 90 > th dose dependent rect. 15 1
888 337.60 temperature 10 10 > th dose dependent rect. 3 21
896 337.61 humidity 60 43200 > th dose independent rect. 19 17
937 337.67 atmosphere 995 720 > th dose independent sin 1 NA
948 337.69 humidity 90 270 < th dose dependent rect. 22 3
975 337.72 wind 9 30 > th dose independent sin 22 NA
994 337.78 radiation 10 4320 < th dose independent rect. 15 14