Os08g0248500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0248500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.24 | 0.755 | 3.18 | 0.0909 | 0.184 | 5.33 | -0.0397 | 7.63 | 0.0697 | 3.56 | 10.15 | 62 | -- | -- |
| 259.47 | 0.75 | 3.15 | 0.0824 | 0.194 | 4.07 | -0.427 | -- | 0.0852 | 4.78 | 10.15 | 58 | -- | -- |
| 258.23 | 0.748 | 3.18 | 0.096 | 0.184 | 5.3 | -- | 7.68 | 0.0701 | 3.44 | 10.1 | 61 | -- | -- |
| 258.78 | 0.749 | 3.16 | 0.0493 | 0.194 | 3.54 | -- | -- | 0.0758 | 3.53 | 10.1 | 58 | -- | -- |
| 260.09 | 0.751 | 3.18 | 0.0978 | -- | 5.34 | -- | 8.24 | 0.0734 | -- | 10.14 | 61 | -- | -- |
| 276.27 | 0.779 | 3.17 | -0.0544 | 0.114 | -- | 0.293 | -- | 0.0346 | 2.28 | -- | -- | -- | -- |
| 276.55 | 0.779 | 3.17 | -0.0629 | 0.121 | -- | -- | -- | 0.0325 | 3.17 | -- | -- | -- | -- |
| 260.7 | 0.752 | 3.16 | 0.0661 | -- | 3.5 | -- | -- | 0.0764 | -- | 10.1 | 55 | -- | -- |
| 258.84 | 0.749 | 3.16 | -- | 0.186 | 3.48 | -- | -- | 0.0674 | 3.46 | 10.1 | 58 | -- | -- |
| 277.37 | 0.778 | 3.17 | -0.0578 | -- | -- | -- | -- | 0.0357 | -- | -- | -- | -- | -- |
| 276.65 | 0.778 | 3.17 | -- | 0.119 | -- | -- | -- | 0.0396 | 3.17 | -- | -- | -- | -- |
| 260.73 | 0.752 | 3.16 | -- | -- | 3.39 | -- | -- | 0.0681 | -- | 10.1 | 55 | -- | -- |
| 277.46 | 0.777 | 3.17 | -- | -- | -- | -- | -- | 0.0421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.91 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 9 | 253.91 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 33 | 258.13 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 35 | 258.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 14 |
| 36 | 258.96 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 45 | 259.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 62 | 260.67 | humidity | 70 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 65 | 260.95 | humidity | 60 | 30 | > th | dose independent | sin | 10 | NA |
| 67 | 261.07 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 68 | 261.07 | humidity | 70 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 79 | 261.08 | humidity | 70 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 91 | 261.15 | humidity | 70 | 270 | < th | dose independent | rect. | 18 | 16 |
| 93 | 261.17 | humidity | 60 | 30 | < th | dose independent | sin | 10 | NA |
| 97 | 261.27 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 109 | 261.30 | humidity | 70 | 90 | > th | dose independent | rect. | 14 | 1 |
| 117 | 261.41 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 128 | 261.55 | humidity | 70 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 192 | 261.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 193 | 261.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 207 | 261.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 215 | 261.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 229 | 262.09 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 231 | 262.11 | humidity | 70 | 270 | < th | dose independent | rect. | 6 | 4 |
| 242 | 262.11 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 284 | 262.43 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 300 | 262.44 | humidity | 70 | 270 | < th | dose independent | rect. | 7 | 2 |
| 321 | 262.52 | humidity | 70 | 30 | < th | dose dependent | sin | 10 | NA |
| 342 | 262.70 | humidity | 60 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 399 | 262.77 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 464 | 262.95 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 491 | 263.02 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 1 |
| 628 | 263.14 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 697 | 263.27 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 977 | 263.55 | radiation | 30 | 10 | > th | dose dependent | sin | 11 | NA |