Os08g0248100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0248100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 248.19 | 0.74 | 4.15 | -0.537 | 0.961 | 1.75 | 0.695 | 1.34 | 1.17 | 6.8 | 21.5 | 816 | -- | -- |
| 252.98 | 0.741 | 4.2 | -0.822 | 0.97 | 1.66 | 0.111 | -- | 1.09 | 6.73 | 21.5 | 783 | -- | -- |
| 249.25 | 0.735 | 4.15 | -0.567 | 0.966 | 1.73 | -- | 1.14 | 1.17 | 6.8 | 21.49 | 795 | -- | -- |
| 253 | 0.741 | 4.19 | -0.873 | 0.969 | 1.67 | -- | -- | 1.09 | 6.77 | 21.5 | 783 | -- | -- |
| 289.84 | 0.793 | 4.19 | -0.644 | -- | 1.8 | -- | 1.12 | 1.14 | -- | 21.5 | 1370 | -- | -- |
| 351.49 | 0.879 | 4.1 | -0.263 | 0.781 | -- | 0.287 | -- | 1.56 | 5.62 | -- | -- | -- | -- |
| 351.69 | 0.878 | 4.1 | -0.261 | 0.783 | -- | -- | -- | 1.56 | 5.65 | -- | -- | -- | -- |
| 293.38 | 0.798 | 4.22 | -0.93 | -- | 1.69 | -- | -- | 1.1 | -- | 21.5 | 1392 | -- | -- |
| 271.26 | 0.767 | 4.16 | -- | 0.939 | 1.45 | -- | -- | 1.22 | 6.62 | 21.5 | 769 | -- | -- |
| 383.52 | 0.915 | 4.11 | -0.236 | -- | -- | -- | -- | 1.58 | -- | -- | -- | -- | -- |
| 353.49 | 0.879 | 4.09 | -- | 0.779 | -- | -- | -- | 1.59 | 5.67 | -- | -- | -- | -- |
| 312.32 | 0.823 | 4.18 | -- | -- | 1.37 | -- | -- | 1.26 | -- | 21.58 | 1065 | -- | -- |
| 385 | 0.916 | 4.1 | -- | -- | -- | -- | -- | 1.61 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 251.32 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 12 | 252.38 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 89 | 257.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 99 | 257.79 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 111 | 258.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 122 | 258.82 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 127 | 259.17 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 134 | 259.40 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 155 | 260.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 182 | 262.02 | temperature | 15.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 202 | 262.70 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 224 | 263.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 269 | 265.12 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 277 | 265.26 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 295 | 265.61 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 311 | 265.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 16 |
| 316 | 266.16 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 321 | 266.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 349 | 266.86 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 358 | 266.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 379 | 267.45 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 16 |
| 415 | 268.18 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 420 | 268.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 470 | 269.02 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 481 | 269.14 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 486 | 269.24 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 491 | 269.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 500 | 269.41 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 505 | 269.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 531 | 269.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 539 | 269.94 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 542 | 269.96 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 552 | 270.08 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 555 | 270.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 579 | 270.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 580 | 270.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 584 | 270.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 585 | 270.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 598 | 270.51 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 22 |
| 618 | 270.63 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 651 | 270.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 9 |
| 684 | 271.12 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 687 | 271.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 690 | 271.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 714 | 271.37 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 720 | 271.45 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 772 | 271.91 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 781 | 271.99 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 782 | 272.00 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 790 | 272.06 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 843 | 272.42 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 934 | 273.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 948 | 273.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 975 | 273.39 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 978 | 273.41 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |