Os08g0246300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0246300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.42 | 0.814 | 6.41 | 4.23 | 1.43 | -2.18 | -0.816 | 0.58 | 0.403 | 19.3 | 21.6 | 3312 | -- | -- |
| 301.28 | 0.808 | 6.42 | 4.06 | 1.4 | -2.17 | -0.819 | -- | 0.378 | 19.2 | 21.5 | 3322 | -- | -- |
| 295.63 | 0.801 | 6.42 | 4.09 | 1.49 | -2.05 | -- | 1.07 | 0.424 | 19.2 | 22 | 2198 | -- | -- |
| 297.14 | 0.803 | 6.44 | 3.79 | 1.43 | -2.07 | -- | -- | 0.355 | 19.4 | 22 | 2176 | -- | -- |
| 399.14 | 0.93 | 6.35 | 4.12 | -- | -1.97 | -- | 1.15 | 0.445 | -- | 22.4 | 2865 | -- | -- |
| 432.67 | 0.975 | 6.6 | 2.83 | 1.4 | -- | -0.847 | -- | -0.376 | 19.1 | -- | -- | -- | -- |
| 434.49 | 0.976 | 6.6 | 2.85 | 1.4 | -- | -- | -- | -0.378 | 19 | -- | -- | -- | -- |
| 401.95 | 0.934 | 6.4 | 3.84 | -- | -2.07 | -- | -- | 0.339 | -- | 22.1 | 2911 | -- | -- |
| 601.49 | 1.14 | 6.6 | -- | 1.4 | -1.01 | -- | -- | -0.335 | 19.2 | 22.9 | 1431 | -- | -- |
| 538.2 | 1.08 | 6.57 | 2.82 | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
| 648.46 | 1.19 | 6.67 | -- | 1.37 | -- | -- | -- | -0.695 | 19.1 | -- | -- | -- | -- |
| 696.09 | 1.23 | 6.57 | -- | -- | -1.1 | -- | -- | -0.387 | -- | 22.3 | 1408 | -- | -- |
| 748.13 | 1.28 | 6.64 | -- | -- | -- | -- | -- | -0.716 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.63 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 4 | 275.12 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 5 | 275.26 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 6 | 275.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 11 | 277.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 12 | 277.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 19 | 279.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 21 | 279.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 22 | 279.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 55 | 289.44 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 56 | 289.56 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 63 | 290.76 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 67 | 291.23 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 71 | 291.78 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 72 | 291.93 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 75 | 292.31 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 78 | 292.34 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 85 | 292.56 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 98 | 293.36 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 106 | 293.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 117 | 294.43 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 130 | 295.57 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 170 | 297.15 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 171 | 297.15 | temperature | 15.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 177 | 297.33 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 180 | 297.36 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 191 | 297.68 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 220 | 298.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 234 | 298.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 248 | 298.36 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 351 | 299.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 396 | 299.33 | wind | 9.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 397 | 299.33 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 503 | 300.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 597 | 300.79 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 715 | 301.51 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 21 |
| 771 | 301.99 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 783 | 302.04 | wind | 9.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 805 | 302.21 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 901 | 302.95 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 927 | 303.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |