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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0246100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0183) R2 : 0.00178
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0347 (0.0385) R2dN8 : 0.00229 R2N8 : 0.00178
σ : 0.345
deviance : 54.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.46 0.311 1.61 -2.61 0.0804 141 -0.0791 297 0.0444 10.6 15 90 -- --
52.61 0.34 2.84 -0.129 0.116 0.00831 -0.327 -- 0.0207 11.1 15 90 -- --
44.49 0.311 1.61 -2.61 0.0805 141 -- 297 0.0442 10.8 15 90 -- --
48.59 0.325 2.81 -0.0799 0.0906 -0.886 -- -- 0.0791 8.4 16.9 448 -- --
44.88 0.312 1.6 -2.63 -- 142 -- 299 0.0439 -- 15.1 90 -- --
52.61 0.34 2.84 -0.129 0.116 -- -0.328 -- 0.0208 11.1 -- -- -- --
53.06 0.341 2.84 -0.142 0.118 -- -- -- 0.0197 11.2 -- -- -- --
48.55 0.325 2.83 -0.0198 -- -0.97 -- -- 0.0595 -- 16.97 447 -- --
48.16 0.323 2.83 -- 0.0814 -0.966 -- -- 0.0609 11.1 17 426 -- --
53.93 0.343 2.84 -0.145 -- -- -- -- 0.0186 -- -- -- -- --
53.59 0.342 2.84 -- 0.119 -- -- -- 0.0355 11.3 -- -- -- --
48.56 0.325 2.83 -- -- -0.981 -- -- 0.062 -- 16.99 447 -- --
54.48 0.345 2.84 -- -- -- -- -- 0.0347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.90 temperature 20.0 270 < th dose dependent rect. 8 2
10 43.60 atmosphere 1015.0 720 < th dose independent rect. 23 16
12 43.69 temperature 15.0 720 > th dose independent rect. 3 8
28 44.20 temperature 15.0 720 > th dose independent rect. 3 11
29 44.21 temperature 25.0 10 < th dose dependent rect. 12 1
31 44.24 humidity 90.0 270 > th dose independent rect. 9 1
32 44.25 humidity 90.0 270 > th dose dependent rect. 9 1
35 44.29 temperature 25.0 10 < th dose dependent rect. 10 3
36 44.30 temperature 15.0 4320 > th dose independent rect. 15 1
37 44.30 atmosphere 1015.0 1440 < th dose independent rect. 15 1
40 44.33 radiation 1.0 270 < th dose independent rect. 8 1
42 44.33 radiation 1.0 270 < th dose dependent rect. 8 1
48 44.35 temperature 15.0 4320 > th dose independent rect. 12 1
51 44.36 humidity 90.0 270 > th dose dependent rect. 8 4
62 44.38 temperature 15.0 4320 < th dose dependent rect. 13 6
67 44.39 temperature 15.0 4320 < th dose dependent rect. 14 1
69 44.39 temperature 15.0 4320 < th dose dependent rect. 16 2
71 44.39 temperature 15.0 4320 < th dose dependent rect. 12 3
88 44.40 temperature 15.0 4320 < th dose independent rect. 12 1
89 44.40 wind 7.0 720 > th dose independent rect. 3 5
116 44.41 wind 7.0 720 > th dose independent rect. 7 1
121 44.41 atmosphere 1015.0 1440 > th dose independent rect. 14 7
122 44.41 atmosphere 1015.0 1440 < th dose independent rect. 14 7
123 44.41 temperature 15.0 720 > th dose independent rect. 5 8
128 44.41 temperature 15.0 4320 < th dose dependent rect. 20 1
129 44.41 atmosphere 1015.0 1440 > th dose dependent rect. 20 1
134 44.41 atmosphere 1015.0 1440 > th dose dependent rect. 16 6
154 44.42 humidity 90.0 270 > th dose independent rect. 9 3
155 44.42 atmosphere 1015.0 1440 > th dose independent rect. 16 5
160 44.42 wind 7.0 720 > th dose dependent rect. 7 1
161 44.42 humidity 90.0 1440 > th dose dependent rect. 11 1
169 44.42 atmosphere 1015.0 1440 > th dose dependent rect. 18 4
191 44.43 atmosphere 1015.0 720 > th dose independent sin 2 NA
193 44.43 atmosphere 1015.0 720 < th dose independent sin 2 NA
195 44.43 temperature 15.0 720 < th dose independent rect. 1 1
197 44.43 atmosphere 1015.0 1440 < th dose independent rect. 19 1
200 44.43 temperature 20.0 30 < th dose independent rect. 9 3
202 44.43 temperature 20.0 90 < th dose independent rect. 12 3
211 44.43 atmosphere 1015.0 720 > th dose dependent sin 2 NA
213 44.43 temperature 15.0 720 < th dose dependent rect. 1 1
248 44.43 atmosphere 1015.0 720 > th dose dependent rect. 1 20
250 44.44 temperature 15.0 90 > th dose independent sin 1 NA
251 44.44 temperature 15.0 90 > th dose independent sin 3 NA
252 44.44 temperature 20.0 90 < th dose independent rect. 10 1
253 44.44 temperature 20.0 270 < th dose independent rect. 12 1
256 44.44 precipitation 0.1 270 > th dose independent rect. 9 1
266 44.44 temperature 15.0 4320 < th dose independent rect. 14 3
283 44.44 atmosphere 1015.0 720 < th dose independent rect. 1 14
285 44.44 precipitation 0.1 270 > th dose dependent rect. 9 1
330 44.45 atmosphere 1015.0 1440 > th dose independent rect. 14 1
331 44.45 atmosphere 1015.0 720 > th dose independent rect. 24 1
359 44.45 humidity 90.0 10 > th dose independent rect. 9 3
411 44.45 atmosphere 1015.0 1440 > th dose dependent sin 19 NA
425 44.45 atmosphere 1015.0 1440 > th dose dependent rect. 14 1
426 44.45 atmosphere 1015.0 720 > th dose dependent rect. 24 1
453 44.45 humidity 90.0 10 > th dose dependent rect. 9 3
562 44.46 temperature 15.0 90 > th dose independent no NA NA
564 44.46 temperature 15.0 90 < th dose independent sin 7 NA
612 44.46 temperature 15.0 90 < th dose independent no NA NA
619 44.46 temperature 15.0 1440 < th dose independent rect. 9 1
631 44.46 atmosphere 1015.0 1440 > th dose independent rect. 12 1
834 44.46 atmosphere 1015.0 720 < th dose independent rect. 1 8