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Os08g0244400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.52 (0.0229) R2 : 0.717
β1 : 1.31 (0.0837) R2dD : 0.157 R2D : 0.0854
β2 : 0.785 (0.0671) R2dC : 0.117 R2C : 0.279
β3 : -1.15 (0.0639) R2dE : 0.278 R2E : 0.416
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.463 (0.049) R2dN8 : 0.0751 R2N8 : -0.00435
σ : 0.427
deviance : 84.15
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C
peak time of C : 15.4
E
wheather : wind
threshold : 4.6
memory length : 317
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.89
open length of G : 2.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.55 0.429 6.52 1.27 0.811 -1.11 0.0725 -0.505 0.454 15.5 4.896 304 3 2.17
84.08 0.427 6.53 1.3 0.793 -1.12 0.227 -- 0.444 15.4 4.698 308 2.98 2.2
83.47 0.426 6.52 1.27 0.804 -1.12 -- -0.532 0.454 15.5 4.9 308 3.02 2.17
84.15 0.427 6.52 1.31 0.785 -1.15 -- -- 0.463 15.4 4.6 317 2.89 2.25
105.07 0.477 6.5 1.33 -- -1.45 -- -0.233 0.523 -- 5.218 338 2.55 2.13
119.45 0.512 6.56 1.24 1.61 -- 0.448 -- 0.385 16.9 -- -- -- --
119.97 0.513 6.56 1.25 1.61 -- -- -- 0.387 16.9 -- -- -- --
105.32 0.478 6.51 1.31 -- -1.47 -- -- 0.491 -- 5.5 343 2.49 2.11
129.09 0.529 6.55 -- 0.789 -1.11 -- -- 0.326 15.3 5.263 309 2.97 2.33
256.65 0.749 6.54 1.19 -- -- -- -- 0.346 -- -- -- -- --
160.85 0.593 6.59 -- 1.59 -- -- -- 0.248 16.9 -- -- -- --
150.42 0.571 6.55 -- -- -1.47 -- -- 0.341 -- 5.476 328 2.43 2.38
293.76 0.8 6.57 -- -- -- -- -- 0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.84 wind 5.0 270 < th dose independent rect. 3 2
3 86.13 precipitation 0.1 270 < th dose independent rect. 3 2
4 86.13 precipitation 0.1 270 < th dose dependent rect. 3 2
5 86.25 wind 5.0 90 < th dose independent rect. 3 5
6 86.58 wind 7.0 90 < th dose independent rect. 9 18
11 86.81 radiation 30.0 90 < th dose independent rect. 3 6
12 86.83 wind 9.0 90 < th dose dependent rect. 3 6
14 86.84 precipitation 0.1 90 < th dose independent rect. 3 6
15 86.84 precipitation 0.1 90 < th dose dependent rect. 3 6
25 87.55 temperature 30.0 90 < th dose independent rect. 3 6
26 87.55 wind 9.0 270 < th dose independent rect. 5 22
35 87.93 humidity 60.0 90 > th dose independent rect. 3 6
36 88.00 wind 9.0 270 < th dose dependent rect. 3 3
38 88.02 temperature 10.0 90 > th dose independent rect. 3 6
41 88.02 atmosphere 995.0 90 > th dose independent rect. 3 6
42 88.02 atmosphere 1015.0 90 < th dose independent rect. 3 6
43 88.02 temperature 10.0 90 > th dose independent rect. 9 18
56 88.12 radiation 1.0 270 < th dose dependent rect. 3 2
58 88.14 temperature 10.0 270 > th dose independent rect. 3 2
60 88.14 temperature 30.0 270 < th dose independent rect. 3 2
61 88.14 humidity 50.0 270 > th dose independent rect. 3 2
64 88.14 atmosphere 995.0 270 > th dose independent rect. 3 2
65 88.14 atmosphere 1010.0 270 < th dose independent rect. 3 2
67 88.14 radiation 20.0 270 < th dose independent rect. 3 2
70 88.14 temperature 10.0 270 > th dose independent rect. 5 22
72 88.16 radiation 40.0 270 < th dose dependent rect. 3 2
79 88.25 radiation 1.0 270 < th dose independent rect. 3 2
81 88.40 wind 9.0 90 < th dose dependent rect. 8 19
99 88.50 wind 7.0 10 < th dose independent rect. 9 19
101 88.56 wind 9.0 10 < th dose dependent rect. 4 5
112 88.80 temperature 10.0 90 > th dose dependent rect. 3 5
121 89.01 precipitation 0.1 90 < th dose independent rect. 8 19
122 89.01 precipitation 0.1 90 < th dose dependent rect. 8 19
151 89.39 precipitation 0.1 10 < th dose independent rect. 4 5
152 89.39 radiation 40.0 270 < th dose dependent rect. 2 5
153 89.39 precipitation 0.1 10 < th dose dependent rect. 4 5
156 89.41 atmosphere 995.0 90 > th dose independent rect. 8 19
175 89.59 temperature 10.0 270 > th dose dependent rect. 3 3
187 89.71 temperature 10.0 10 > th dose independent rect. 4 5
189 89.71 temperature 30.0 10 < th dose independent rect. 4 5
190 89.71 humidity 50.0 10 > th dose independent rect. 4 5
192 89.71 atmosphere 995.0 10 > th dose independent rect. 4 5
193 89.71 atmosphere 1015.0 10 < th dose independent rect. 4 5
194 89.71 temperature 10.0 10 > th dose independent rect. 9 19
196 89.73 humidity 50.0 270 > th dose dependent rect. 3 2
224 90.09 precipitation 0.1 270 < th dose independent rect. 6 21
226 90.09 precipitation 0.1 270 < th dose dependent rect. 6 21
277 90.35 radiation 40.0 270 < th dose dependent rect. 1 7
288 90.46 temperature 10.0 90 > th dose dependent rect. 8 7
309 90.60 atmosphere 995.0 10 > th dose independent rect. 9 19
322 90.72 temperature 10.0 10 > th dose dependent rect. 4 5
350 91.00 temperature 15.0 90 > th dose independent rect. 8 7
368 91.11 temperature 15.0 270 > th dose independent rect. 6 8
373 91.15 atmosphere 1015.0 270 < th dose dependent rect. 3 2
384 91.28 atmosphere 1015.0 90 < th dose independent rect. 8 19
402 91.45 wind 9.0 270 < th dose dependent rect. 7 7
408 91.47 atmosphere 995.0 270 > th dose independent rect. 6 21
414 91.50 humidity 50.0 90 > th dose dependent rect. 3 6
425 91.66 precipitation 0.1 270 < th dose independent rect. 14 16
427 91.66 precipitation 0.1 270 < th dose dependent rect. 14 16
436 91.72 temperature 10.0 90 > th dose dependent rect. 8 19
451 91.88 radiation 1.0 270 < th dose dependent rect. 3 9
469 92.02 temperature 10.0 10 > th dose dependent rect. 9 19
482 92.04 wind 9.0 90 < th dose independent rect. 8 7
496 92.15 wind 7.0 270 < th dose independent rect. 6 8
505 92.23 precipitation 0.1 90 < th dose independent rect. 8 7
508 92.23 precipitation 0.1 90 < th dose dependent rect. 8 7
512 92.28 radiation 40.0 90 < th dose independent rect. 15 17
542 92.42 atmosphere 1015.0 90 < th dose independent rect. 8 7
543 92.42 temperature 10.0 90 > th dose independent rect. 15 17
550 92.45 atmosphere 995.0 90 > th dose independent rect. 8 7
551 92.45 precipitation 0.1 270 < th dose independent rect. 2 16
553 92.45 precipitation 0.1 270 < th dose dependent rect. 2 16
566 92.54 precipitation 0.1 270 < th dose independent rect. 6 8
567 92.54 precipitation 0.1 270 < th dose dependent rect. 6 8
570 92.55 wind 9.0 270 < th dose independent rect. 21 14
583 92.57 radiation 1.0 90 > th dose independent rect. 8 7
592 92.64 wind 1.0 270 > th dose independent rect. 11 10
598 92.72 atmosphere 995.0 270 > th dose independent rect. 6 8
599 92.72 atmosphere 1015.0 270 < th dose independent rect. 6 8
613 92.75 temperature 10.0 270 > th dose independent rect. 11 10
614 92.75 temperature 10.0 270 > th dose independent rect. 21 14
615 92.75 atmosphere 995.0 270 > th dose independent rect. 21 14
619 92.77 humidity 90.0 90 < th dose independent rect. 8 7
639 92.84 atmosphere 1015.0 10 < th dose independent rect. 9 19
646 92.89 wind 9.0 90 < th dose independent rect. 15 17
659 92.96 humidity 50.0 270 > th dose dependent rect. 19 7
691 93.08 radiation 1.0 270 < th dose dependent rect. 18 8
692 93.09 temperature 10.0 10 > th dose dependent rect. 9 6
693 93.10 atmosphere 995.0 90 > th dose dependent rect. 3 5
702 93.14 atmosphere 1015.0 90 < th dose dependent rect. 3 5
713 93.19 wind 1.0 270 > th dose independent rect. 1 6
720 93.21 atmosphere 995.0 270 > th dose independent rect. 18 8
727 93.24 wind 9.0 270 < th dose independent rect. 18 8
735 93.26 temperature 10.0 270 > th dose independent rect. 18 8
736 93.26 humidity 50.0 270 > th dose independent rect. 18 8
737 93.26 radiation 10.0 270 < th dose independent rect. 18 8
741 93.26 temperature 10.0 270 > th dose independent rect. 2 16
742 93.26 atmosphere 1015.0 270 < th dose independent rect. 2 16
745 93.27 humidity 70.0 90 > th dose independent rect. 3 8
750 93.29 humidity 50.0 270 > th dose independent rect. 21 14
768 93.36 temperature 30.0 270 < th dose independent rect. 19 7
853 93.66 precipitation 0.1 270 < th dose independent rect. 11 10
855 93.66 precipitation 0.1 270 < th dose dependent rect. 11 10
879 93.73 radiation 1.0 270 < th dose independent rect. 3 9
885 93.76 atmosphere 1015.0 270 < th dose independent rect. 11 10
896 93.79 temperature 10.0 270 > th dose dependent rect. 8 3
932 93.88 atmosphere 995.0 10 > th dose dependent rect. 4 5
955 93.94 wind 1.0 270 > th dose independent rect. 3 2
956 93.94 precipitation 0.1 10 < th dose independent rect. 16 17
959 93.94 precipitation 0.1 10 < th dose dependent rect. 16 17
962 93.97 wind 9.0 270 < th dose independent rect. 11 10
983 94.05 wind 1.0 90 > th dose independent rect. 8 7