Os08g0243100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 4'-phosphopantetheinyl transferase domain containing protein.
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Os08g0243100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 4'-phosphopantetheinyl transferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.57 | 0.284 | 9.62 | -1.02 | 2.34 | 0.32 | 1.02 | 3.11 | 0.0422 | 7.33 | 30.4 | 2526 | -- | -- |
| 37.29 | 0.284 | 9.7 | -1.54 | 2.34 | 0.668 | 1.17 | -- | 0.0381 | 7.32 | 30.1 | 2548 | -- | -- |
| 39.05 | 0.291 | 9.62 | -0.914 | 2.33 | 0.248 | -- | 3.65 | 0.0323 | 7.31 | 30.8 | 2514 | -- | -- |
| 39.83 | 0.294 | 9.69 | -1.56 | 2.34 | 0.672 | -- | -- | 0.0205 | 7.31 | 29.9 | 2615 | -- | -- |
| 326.43 | 0.841 | 9.65 | -0.81 | -- | 0.187 | -- | 4.06 | 0.0849 | -- | 30.46 | 2836 | -- | -- |
| 55.31 | 0.349 | 9.71 | -1.36 | 2.34 | -- | 0.988 | -- | -0.0881 | 7.19 | -- | -- | -- | -- |
| 57.9 | 0.356 | 9.72 | -1.34 | 2.34 | -- | -- | -- | -0.0904 | 7.18 | -- | -- | -- | -- |
| 322.02 | 0.836 | 9.73 | -1.41 | -- | 0.685 | -- | -- | 0.0767 | -- | 31.2 | 5738 | -- | -- |
| 98.2 | 0.462 | 9.66 | -- | 2.34 | 0.458 | -- | -- | 0.147 | 7.29 | 32.5 | 2472 | -- | -- |
| 347.66 | 0.871 | 9.77 | -1.3 | -- | -- | -- | -- | -0.0494 | -- | -- | -- | -- | -- |
| 105.45 | 0.48 | 9.68 | -- | 2.33 | -- | -- | -- | 0.0592 | 7.21 | -- | -- | -- | -- |
| 373.06 | 0.9 | 9.73 | -- | -- | 0.541 | -- | -- | 0.0813 | -- | 34.19 | 7104 | -- | -- |
| 392.23 | 0.924 | 9.74 | -- | -- | -- | -- | -- | 0.0948 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 36.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 6 | 36.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 9 | 36.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 10 | 36.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 17 | 36.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 18 | 36.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 87 | 36.74 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 88 | 36.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 114 | 36.82 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 172 | 36.94 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 184 | 36.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 187 | 36.98 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 302 | 37.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 330 | 37.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 349 | 37.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 354 | 37.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 372 | 37.26 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 413 | 37.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 475 | 37.27 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 488 | 37.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 545 | 37.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 583 | 37.30 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 618 | 37.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 634 | 37.33 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 635 | 37.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 756 | 37.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 937 | 37.54 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 939 | 37.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 952 | 37.55 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 982 | 37.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |