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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0242000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0254) R2 : 0.000652
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0291 (0.0534) R2dN8 : 0.000842 R2N8 : 0.000652
σ : 0.478
deviance : 104.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.21 0.463 2.95 -0.228 0.261 0.314 -0.105 -1.33 -0.0942 11.2 87.49 820 -- --
100.29 0.466 2.96 -0.122 0.253 0.325 0.393 -- -0.0827 11.5 88.8 872 -- --
97.22 0.459 2.95 -0.224 0.26 0.322 -- -1.28 -0.0936 11.4 87.8 852 -- --
100.96 0.468 2.96 -0.11 0.252 0.323 -- -- -0.0833 11.4 88.83 872 -- --
100.01 0.466 2.96 -0.258 -- 0.102 -- -1.25 -0.0807 -- 88 806 -- --
102.35 0.474 2.96 -0.164 0.133 -- 0.385 -- -0.0459 12.6 -- -- -- --
102.98 0.475 2.96 -0.149 0.132 -- -- -- -0.0439 12.7 -- -- -- --
102.33 0.473 2.97 -0.133 -- 0.134 -- -- -0.0758 -- 88 806 -- --
101.26 0.469 2.96 -- 0.261 0.344 -- -- -0.0733 11.4 88.99 872 -- --
104.07 0.477 2.96 -0.154 -- -- -- -- -0.0462 -- -- -- -- --
103.57 0.476 2.95 -- 0.134 -- -- -- -0.0272 12.7 -- -- -- --
102.79 0.474 2.96 -- -- 0.139 -- -- -0.0624 -- 88 806 -- --
104.7 0.478 2.96 -- -- -- -- -- -0.0291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.35 atmosphere 1000 10 < th dose independent rect. 13 1
15 92.50 temperature 30 30 > th dose independent rect. 13 1
17 93.42 temperature 30 10 > th dose dependent rect. 14 1
23 93.55 temperature 30 90 > th dose dependent rect. 12 1
56 95.55 humidity 90 720 < th dose dependent rect. 3 3
61 95.84 humidity 90 720 < th dose dependent rect. 1 5
62 95.85 humidity 90 720 < th dose independent rect. 3 1
64 95.91 humidity 90 720 < th dose dependent sin 9 NA
66 95.94 humidity 90 720 < th dose independent rect. 2 4
68 96.04 humidity 90 720 < th dose dependent rect. 24 10
77 96.19 humidity 80 1440 > th dose independent rect. 24 2
78 96.20 humidity 90 720 < th dose dependent rect. 21 13
81 96.24 humidity 90 720 < th dose dependent rect. 19 16
90 96.36 humidity 90 720 < th dose independent rect. 24 11
94 96.40 humidity 80 720 < th dose independent rect. 1 1
98 96.40 wind 1 10 < th dose independent rect. 9 3
99 96.40 humidity 80 720 < th dose dependent rect. 1 1
110 96.46 humidity 70 720 > th dose dependent sin 6 NA
114 96.48 wind 1 10 < th dose dependent rect. 6 4
120 96.52 radiation 40 90 > th dose dependent rect. 12 1
127 96.56 humidity 60 1440 > th dose independent rect. 24 9
132 96.60 humidity 70 720 > th dose dependent rect. 23 15
147 96.74 humidity 90 720 < th dose independent sin 7 NA
150 96.75 humidity 70 720 > th dose dependent rect. 21 17
151 96.76 humidity 60 270 < th dose independent rect. 8 1
178 96.76 humidity 60 270 < th dose dependent rect. 8 1
236 96.79 wind 1 10 < th dose dependent rect. 9 3
249 96.79 humidity 60 10 < th dose dependent rect. 17 18
268 96.81 humidity 60 10 < th dose independent rect. 17 17
270 96.81 humidity 60 90 < th dose dependent rect. 16 18
271 96.82 humidity 60 90 < th dose independent rect. 16 18
277 96.84 humidity 80 720 > th dose independent sin 6 NA
294 96.86 humidity 60 1440 > th dose independent rect. 8 1
298 96.86 radiation 40 30 > th dose dependent rect. 9 1
326 96.88 humidity 60 10 < th dose independent rect. 9 1
431 96.90 humidity 60 10 < th dose dependent rect. 9 1
495 96.91 wind 1 10 < th dose dependent rect. 6 10
508 96.91 humidity 50 720 > th dose dependent rect. 21 14
532 96.93 radiation 40 10 > th dose independent rect. 13 21
534 96.93 wind 1 10 < th dose dependent rect. 6 8
541 96.94 humidity 70 720 > th dose dependent rect. 1 13
606 97.02 humidity 90 720 < th dose independent rect. 18 18
661 97.14 humidity 60 10 < th dose dependent rect. 14 1
685 97.18 humidity 80 720 > th dose independent rect. 2 11
736 97.25 humidity 70 720 > th dose dependent rect. 2 9
832 97.34 humidity 90 30 < th dose dependent rect. 18 16
841 97.36 atmosphere 1000 10 < th dose independent sin 22 NA
842 97.36 humidity 60 90 < th dose independent rect. 12 1
849 97.37 humidity 60 1440 > th dose independent rect. 3 6
859 97.39 radiation 40 10 > th dose independent rect. 14 1
905 97.40 humidity 60 1440 > th dose independent rect. 5 4
914 97.41 temperature 30 270 > th dose independent rect. 10 1
918 97.41 humidity 50 720 > th dose dependent rect. 23 10
930 97.43 wind 3 30 > th dose dependent rect. 13 1
937 97.44 radiation 40 10 > th dose dependent sin 12 NA
962 97.49 wind 1 10 < th dose dependent sin 22 NA
966 97.50 wind 1 10 < th dose independent rect. 7 9
982 97.52 atmosphere 1000 30 > th dose independent sin 23 NA