Os08g0240000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to STF-1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os08g0240000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to STF-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 454.55 | 1 | 3.85 | -1.39 | 0.973 | 2.49 | -3.41 | -4.39 | -0.207 | 19.6 | 19 | 5908 | -- | -- |
| 462.48 | 1 | 4.02 | -1.43 | 0.988 | 4.12 | -2.89 | -- | -0.358 | 20.1 | 18.06 | 10397 | -- | -- |
| 484.11 | 1.02 | 3.85 | -1.3 | 0.981 | 2.53 | -- | -4.5 | -0.22 | 19.1 | 18.8 | 5793 | -- | -- |
| 493.34 | 1.03 | 4.02 | -1.07 | 0.98 | 4.46 | -- | -- | -0.241 | 19.2 | 18.1 | 10343 | -- | -- |
| 534.11 | 1.08 | 3.84 | -1.31 | -- | 2.61 | -- | -4.32 | -0.24 | -- | 18.8 | 5770 | -- | -- |
| 678.23 | 1.22 | 4.22 | -4.11 | 0.995 | -- | -3.72 | -- | -1.2 | 19.6 | -- | -- | -- | -- |
| 715.44 | 1.25 | 4.22 | -4.01 | 1.02 | -- | -- | -- | -1.2 | 19 | -- | -- | -- | -- |
| 545.82 | 1.09 | 3.98 | -1 | -- | 4.56 | -- | -- | -0.222 | -- | 18.1 | 10326 | -- | -- |
| 502.99 | 1.04 | 3.97 | -- | 1.06 | 4.94 | -- | -- | -0.0247 | 19.2 | 17.5 | 13097 | -- | -- |
| 770.31 | 1.3 | 4.2 | -4.03 | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
| 1138.46 | 1.58 | 4.12 | -- | 1.07 | -- | -- | -- | -0.752 | 18.7 | -- | -- | -- | -- |
| 555.6 | 1.1 | 3.93 | -- | -- | 5.01 | -- | -- | -0.0168 | -- | 17.5 | 13078 | -- | -- |
| 1198.12 | 1.62 | 4.1 | -- | -- | -- | -- | -- | -0.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 445.57 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 8 | 447.75 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 51 | 451.62 | wind | 7 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 81 | 452.42 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 85 | 452.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 15 |
| 106 | 452.76 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |
| 126 | 453.05 | wind | 7 | 43200 | < th | dose dependent | sin | 3 | NA |
| 172 | 453.42 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 176 | 453.43 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 183 | 453.52 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 193 | 453.58 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 196 | 453.64 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 204 | 453.68 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 217 | 453.79 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 224 | 453.83 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 248 | 453.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 251 | 453.97 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 252 | 453.97 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 297 | 454.25 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 324 | 454.39 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 329 | 454.41 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 333 | 454.44 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 339 | 454.45 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 341 | 454.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 352 | 454.50 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 385 | 454.66 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 390 | 454.68 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 391 | 454.68 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 392 | 454.68 | temperature | 20 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 398 | 454.71 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 415 | 454.76 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 423 | 454.78 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 479 | 454.99 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 514 | 455.11 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 534 | 455.16 | temperature | 20 | 14400 | > th | dose independent | rect. | 7 | 18 |
| 577 | 455.27 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 579 | 455.28 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 603 | 455.34 | temperature | 20 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 647 | 455.43 | temperature | 15 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 650 | 455.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 654 | 455.44 | temperature | 20 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 655 | 455.44 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 16 |
| 671 | 455.47 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 676 | 455.47 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 707 | 455.51 | temperature | 20 | 43200 | < th | dose dependent | rect. | 15 | 9 |
| 754 | 455.55 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 765 | 455.56 | temperature | 15 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 766 | 455.56 | temperature | 15 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 790 | 455.58 | temperature | 20 | 43200 | < th | dose dependent | sin | 19 | NA |
| 792 | 455.58 | temperature | 20 | 43200 | < th | dose dependent | sin | 22 | NA |
| 843 | 455.63 | temperature | 15 | 43200 | > th | dose independent | sin | 6 | NA |
| 935 | 455.69 | temperature | 15 | 43200 | < th | dose independent | rect. | 20 | 11 |