Os08g0238100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0238100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.97 | 0.412 | 7.3 | 0.25 | 0.391 | 2.06 | -0.622 | 1.65 | -0.262 | 10.6 | 15.82 | 12 | -- | -- |
| 77.9 | 0.411 | 7.33 | 0.0402 | 0.381 | 1.85 | -0.429 | -- | -0.329 | 10.2 | 19.31 | 18 | -- | -- |
| 78.13 | 0.415 | 7.32 | 0.149 | 0.387 | 1.85 | -- | 0.838 | -0.282 | 11 | 17.67 | 19 | -- | -- |
| 78.31 | 0.412 | 7.33 | 0.0197 | 0.396 | 1.81 | -- | -- | -0.322 | 10.8 | 19.09 | 18 | -- | -- |
| 85.82 | 0.434 | 7.34 | 0.0678 | -- | 2.14 | -- | 0.744 | -0.334 | -- | 17.67 | 19 | -- | -- |
| 124.17 | 0.522 | 7.26 | 0.406 | 0.935 | -- | 0.27 | -- | -0.0161 | 13.2 | -- | -- | -- | -- |
| 124.46 | 0.522 | 7.26 | 0.416 | 0.934 | -- | -- | -- | -0.0149 | 13.1 | -- | -- | -- | -- |
| 86.18 | 0.434 | 7.35 | -0.0231 | -- | 2.05 | -- | -- | -0.362 | -- | 19.09 | 18 | -- | -- |
| 78.33 | 0.412 | 7.33 | -- | 0.398 | 1.81 | -- | -- | -0.328 | 10.8 | 19.05 | 18 | -- | -- |
| 178.56 | 0.624 | 7.28 | 0.38 | -- | -- | -- | -- | -0.0334 | -- | -- | -- | -- | -- |
| 129.02 | 0.531 | 7.27 | -- | 0.927 | -- | -- | -- | -0.0612 | 13.1 | -- | -- | -- | -- |
| 86.17 | 0.434 | 7.35 | -- | -- | 2.04 | -- | -- | -0.359 | -- | 19 | 11 | -- | -- |
| 182.37 | 0.63 | 7.29 | -- | -- | -- | -- | -- | -0.0755 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 77.06 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 9 | 77.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 10 | 77.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 12 | 77.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 18 | 78.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 28 | 78.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 29 | 78.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 32 | 78.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 39 | 79.07 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 42 | 79.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 43 | 79.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 44 | 79.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 49 | 79.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 51 | 79.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 53 | 79.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 59 | 79.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 61 | 79.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 82 | 79.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 86 | 79.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 98 | 80.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 144 | 81.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 179 | 81.81 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 181 | 81.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 189 | 82.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 195 | 82.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 208 | 82.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 297 | 83.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 298 | 83.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 350 | 84.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 369 | 84.23 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 376 | 84.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 378 | 84.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 391 | 84.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 454 | 84.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 752 | 86.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 768 | 86.92 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 791 | 87.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 799 | 87.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 821 | 87.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 981 | 87.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |