Os08g0237800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan endotransglycosylase (Fragment).
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Os08g0237800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglucan endotransglycosylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.83 | 0.596 | 4.99 | 0.787 | 0.415 | 2.28 | 0.946 | -0.119 | -0.216 | 7.94 | 24.96 | 718 | -- | -- |
| 160.84 | 0.591 | 5 | 0.77 | 0.415 | 2.3 | 0.925 | -- | -0.218 | 7.9 | 24.93 | 720 | -- | -- |
| 163.07 | 0.595 | 5 | 0.733 | 0.423 | 2.31 | -- | 0.352 | -0.239 | 7.66 | 24.9 | 748 | -- | -- |
| 163.28 | 0.595 | 5 | 0.794 | 0.422 | 2.29 | -- | -- | -0.218 | 7.65 | 25.04 | 750 | -- | -- |
| 165.44 | 0.599 | 5 | 0.926 | -- | 2.62 | -- | -0.658 | -0.245 | -- | 33 | 689 | -- | -- |
| 238.86 | 0.725 | 5.1 | 0.123 | 0.714 | -- | 0.768 | -- | -0.698 | 8.74 | -- | -- | -- | -- |
| 240.81 | 0.727 | 5.1 | 0.149 | 0.711 | -- | -- | -- | -0.698 | 8.8 | -- | -- | -- | -- |
| 166.06 | 0.6 | 5.02 | 0.799 | -- | 2.55 | -- | -- | -0.281 | -- | 32.6 | 689 | -- | -- |
| 177.2 | 0.62 | 5.03 | -- | 0.457 | 1.95 | -- | -- | -0.371 | 9.01 | 25.05 | 539 | -- | -- |
| 269.51 | 0.767 | 5.12 | 0.15 | -- | -- | -- | -- | -0.693 | -- | -- | -- | -- | -- |
| 241.4 | 0.727 | 5.1 | -- | 0.711 | -- | -- | -- | -0.715 | 8.78 | -- | -- | -- | -- |
| 180.94 | 0.626 | 5.05 | -- | -- | 2.27 | -- | -- | -0.417 | -- | 33.1 | 662 | -- | -- |
| 270.1 | 0.767 | 5.12 | -- | -- | -- | -- | -- | -0.709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 5 | 151.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 9 | 153.46 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 11 | 154.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 14 | 154.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 15 | 154.40 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 16 | 154.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 30 | 155.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 45 | 156.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 54 | 156.51 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 57 | 156.61 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 64 | 156.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 76 | 157.13 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 103 | 157.71 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 118 | 158.02 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 133 | 158.36 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 141 | 158.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 170 | 159.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 182 | 159.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 192 | 159.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 323 | 160.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 379 | 160.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 394 | 160.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 397 | 160.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 408 | 160.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 436 | 161.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 466 | 161.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 471 | 161.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 535 | 161.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 539 | 161.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 543 | 161.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 568 | 161.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 586 | 161.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 610 | 161.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 683 | 161.89 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 698 | 161.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 856 | 162.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 873 | 162.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 998 | 163.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |