Os08g0237100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0237100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.51 | 0.34 | 10.7 | -0.676 | 1.65 | 1.05 | 1.01 | -0.0906 | 0.116 | 6.22 | 21.22 | 34 | -- | -- |
| 52.55 | 0.338 | 10.7 | -0.674 | 1.65 | 1.06 | 1.02 | -- | 0.115 | 6.24 | 21.28 | 33 | -- | -- |
| 54.96 | 0.345 | 10.7 | -0.668 | 1.66 | 1.05 | -- | -0.164 | 0.113 | 6.21 | 20.96 | 33 | -- | -- |
| 55.1 | 0.346 | 10.7 | -0.664 | 1.65 | 1.04 | -- | -- | 0.112 | 6.19 | 20.96 | 33 | -- | -- |
| 72.56 | 0.397 | 10.7 | -0.596 | -- | 1.83 | -- | -0.292 | -0.019 | -- | 0.268 | 512 | -- | -- |
| 72.12 | 0.398 | 10.7 | -0.687 | 1.96 | -- | 0.679 | -- | 0.0447 | 4.04 | -- | -- | -- | -- |
| 73.43 | 0.401 | 10.7 | -0.695 | 1.96 | -- | -- | -- | 0.0409 | 4.02 | -- | -- | -- | -- |
| 68.46 | 0.385 | 10.7 | -0.476 | -- | 2.01 | -- | -- | 0.117 | -- | 0.4418 | 536 | -- | -- |
| 66.66 | 0.38 | 10.6 | -- | 1.64 | 1.07 | -- | -- | 0.187 | 6.24 | 21.95 | 35 | -- | -- |
| 282.64 | 0.786 | 10.7 | -0.616 | -- | -- | -- | -- | 0.0932 | -- | -- | -- | -- | -- |
| 86.18 | 0.434 | 10.7 | -- | 1.94 | -- | -- | -- | 0.118 | 4.02 | -- | -- | -- | -- |
| 75.06 | 0.404 | 10.7 | -- | -- | 2.01 | -- | -- | 0.153 | -- | 0.02 | 534 | -- | -- |
| 292.63 | 0.798 | 10.7 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.56 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 44.26 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 3 | 44.31 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 13 | 45.86 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 14 | 45.98 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 16 | 46.08 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 29 | 47.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 35 | 47.34 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 40 | 47.46 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 43 | 47.48 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 45 | 47.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 48 | 47.68 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 55 | 47.79 | radiation | 1.0 | 270 | > th | dose independent | sin | 4 | NA |
| 61 | 47.86 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 63 | 47.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 66 | 47.92 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 82 | 48.15 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 16 |
| 86 | 48.21 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 89 | 48.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 100 | 48.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 102 | 48.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 111 | 48.59 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 117 | 48.63 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 134 | 48.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 145 | 48.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 147 | 48.92 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 148 | 48.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 151 | 48.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 152 | 48.92 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 154 | 48.92 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 157 | 48.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 158 | 48.92 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 160 | 48.93 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 187 | 49.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 195 | 49.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 197 | 49.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 206 | 49.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 213 | 49.40 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 216 | 49.42 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 232 | 49.49 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 233 | 49.50 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 266 | 49.70 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 267 | 49.71 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 270 | 49.73 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 278 | 49.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 279 | 49.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 291 | 49.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 303 | 49.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 369 | 50.03 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 376 | 50.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 377 | 50.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 378 | 50.05 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 379 | 50.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 388 | 50.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 393 | 50.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 402 | 50.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 413 | 50.16 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 19 |
| 417 | 50.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 483 | 50.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 509 | 50.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 511 | 50.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 512 | 50.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 515 | 50.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 516 | 50.51 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 518 | 50.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 523 | 50.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 524 | 50.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 572 | 50.65 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 578 | 50.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 579 | 50.67 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 582 | 50.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 586 | 50.69 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 589 | 50.69 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 632 | 50.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 681 | 50.89 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 690 | 50.91 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 697 | 50.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 742 | 51.03 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 765 | 51.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 798 | 51.23 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 801 | 51.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 802 | 51.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 803 | 51.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 805 | 51.24 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 806 | 51.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 811 | 51.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 812 | 51.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 821 | 51.27 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 822 | 51.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 827 | 51.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 834 | 51.29 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 860 | 51.38 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 19 |
| 862 | 51.38 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 864 | 51.40 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 879 | 51.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 885 | 51.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 927 | 51.58 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 936 | 51.61 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 942 | 51.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 943 | 51.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 945 | 51.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 946 | 51.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 951 | 51.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 952 | 51.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 953 | 51.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 958 | 51.63 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 962 | 51.64 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 967 | 51.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 984 | 51.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |