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Os08g0237000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Xyloglucan endotransglycosylase/hydrolase protein 8 precursor (EC 2.4.1.207) (End-xyloglucan transferase) (OsXTH8) (OsXRT5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0378) R2 : 0.743
β1 : -2.66 (0.139) R2dD : 0.216 R2D : 0.13
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.91 (0.121) R2dE : 0.601 R2E : 0.524
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.492 (0.081) R2dN8 : 0.0281 R2N8 : -0.0203
σ : 0.708
deviance : 230.76
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -2.904
memory length : 627
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 13.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.6 0.682 10.6 -2.67 2.25 2.24 1.49 -0.401 -0.502 5.02 9.406 259 15 14.1
210.63 0.676 10.6 -2.64 2.19 2.24 1.28 -- -0.491 5.11 8.454 256 15.2 14
215.82 0.684 10.6 -2.62 2.23 2.17 -- 0.0542 -0.5 4.98 9.017 250 15.2 14
215.11 0.683 10.6 -2.68 2.11 2.43 -- -- -0.498 5.64 3.701 265 15.1 14
228.56 0.704 10.6 -2.57 -- 3.86 -- 1.27 -0.415 -- -4.797 615 15.2 13.6
259.88 0.756 10.6 -2.36 2.94 -- 1.12 -- -0.336 2.9 -- -- -- --
264.14 0.761 10.6 -2.38 2.94 -- -- -- -0.343 2.89 -- -- -- --
230.76 0.708 10.7 -2.66 -- 3.91 -- -- -0.492 -- -2.904 627 15.1 13.5
389.74 0.919 10.6 -- 2.26 2.06 -- -- -0.199 5.18 3.909 191 15.6 13.5
762.37 1.29 10.6 -2.26 -- -- -- -- -0.267 -- -- -- -- --
413.55 0.951 10.6 -- 2.89 -- -- -- -0.0775 2.89 -- -- -- --
409.1 0.942 10.6 -- -- 3.26 -- -- -0.229 -- -4.387 520 16.3 12.7
896.57 1.4 10.5 -- -- -- -- -- -0.0167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.97 temperature 10.0 270 > th dose dependent rect. 15 14
7 216.04 temperature 20.0 30 > th dose independent rect. 2 21
10 217.05 temperature 20.0 270 > th dose independent rect. 1 19
12 217.10 temperature 20.0 90 > th dose independent rect. 3 18
42 220.15 wind 7.0 270 < th dose independent rect. 5 10
47 220.55 radiation 10.0 10 < th dose dependent rect. 2 21
56 220.95 temperature 15.0 720 > th dose dependent rect. 17 2
57 220.95 radiation 10.0 10 < th dose dependent rect. 4 19
60 221.10 wind 9.0 270 < th dose independent rect. 10 14
61 221.16 radiation 40.0 270 < th dose independent rect. 24 10
64 221.21 temperature 20.0 270 > th dose independent rect. 14 6
69 221.42 temperature 20.0 270 > th dose independent rect. 15 4
83 221.90 temperature 20.0 270 > th dose independent rect. 14 15
87 222.01 radiation 10.0 30 < th dose independent rect. 2 21
91 222.26 wind 7.0 270 < th dose independent rect. 19 20
92 222.27 radiation 40.0 270 < th dose independent rect. 24 20
103 222.59 precipitation 0.1 270 < th dose independent rect. 5 10
104 222.59 precipitation 0.1 270 < th dose dependent rect. 5 10
111 222.85 temperature 10.0 270 > th dose independent rect. 5 10
112 222.85 atmosphere 1015.0 270 < th dose independent rect. 5 10
113 222.85 temperature 10.0 270 > th dose independent rect. 15 14
115 222.94 temperature 30.0 90 < th dose dependent rect. 21 6
123 223.17 radiation 40.0 270 < th dose independent rect. 15 14
128 223.42 temperature 10.0 270 > th dose dependent rect. 15 4
132 223.61 radiation 10.0 10 < th dose dependent rect. 4 17
136 223.77 temperature 10.0 270 > th dose dependent rect. 14 6
145 223.95 temperature 10.0 270 > th dose dependent rect. 24 9
147 223.98 humidity 50.0 270 > th dose dependent rect. 24 10
152 224.01 wind 7.0 270 < th dose independent rect. 20 18
154 224.02 radiation 40.0 90 < th dose dependent rect. 2 19
168 224.36 atmosphere 1000.0 30 > th dose independent rect. 2 21
172 224.39 radiation 40.0 270 < th dose dependent rect. 24 19
173 224.41 atmosphere 995.0 270 > th dose independent rect. 5 10
184 224.57 radiation 40.0 270 < th dose dependent rect. 24 10
191 224.68 temperature 15.0 270 > th dose independent rect. 24 10
193 224.70 atmosphere 1015.0 270 < th dose independent rect. 24 21
214 224.93 temperature 30.0 270 < th dose dependent rect. 21 3
227 225.20 atmosphere 1015.0 270 < th dose independent rect. 24 10
228 225.21 temperature 10.0 720 > th dose dependent rect. 16 7
230 225.22 wind 9.0 270 < th dose independent rect. 24 10
232 225.23 atmosphere 995.0 270 > th dose independent rect. 24 10
233 225.23 temperature 10.0 270 > th dose independent rect. 10 14
240 225.29 humidity 50.0 270 > th dose independent rect. 24 10
250 225.40 wind 9.0 270 < th dose independent rect. 21 3
251 225.40 temperature 10.0 270 > th dose independent rect. 21 3
252 225.40 temperature 30.0 270 < th dose independent rect. 21 3
253 225.40 humidity 50.0 270 > th dose independent rect. 21 3
256 225.40 atmosphere 995.0 270 > th dose independent rect. 21 3
257 225.40 radiation 1.0 270 < th dose independent rect. 21 3
263 225.40 radiation 1.0 270 < th dose dependent rect. 21 3
276 225.52 atmosphere 1000.0 90 > th dose independent rect. 2 19
288 225.71 precipitation 0.1 270 < th dose independent rect. 19 20
289 225.71 precipitation 0.1 270 < th dose dependent rect. 19 20
295 225.78 precipitation 0.1 270 < th dose independent rect. 21 3
296 225.78 precipitation 0.1 270 < th dose dependent rect. 21 3
305 225.91 wind 9.0 270 < th dose independent rect. 15 14
323 226.14 precipitation 0.1 270 < th dose independent rect. 10 14
325 226.14 precipitation 0.1 270 < th dose dependent rect. 10 14
326 226.15 humidity 50.0 270 > th dose dependent rect. 21 3
329 226.18 atmosphere 995.0 270 > th dose independent rect. 15 14
333 226.21 temperature 10.0 270 > th dose independent rect. 15 4
335 226.21 atmosphere 1010.0 270 < th dose independent rect. 15 4
338 226.21 temperature 10.0 270 > th dose independent rect. 19 20
342 226.29 humidity 50.0 270 > th dose independent rect. 19 20
344 226.30 temperature 10.0 720 > th dose dependent rect. 16 9
356 226.44 radiation 40.0 270 < th dose independent rect. 15 4
357 226.46 temperature 20.0 10 > th dose independent rect. 16 7
364 226.52 atmosphere 995.0 270 > th dose independent rect. 24 21
367 226.56 atmosphere 1010.0 270 < th dose independent rect. 14 6
371 226.61 wind 1.0 30 > th dose independent rect. 23 18
380 226.69 atmosphere 995.0 270 > th dose independent rect. 15 4
384 226.76 radiation 20.0 270 < th dose independent rect. 24 19
414 226.81 wind 1.0 270 > th dose independent rect. 15 4
419 226.84 precipitation 0.1 270 < th dose independent rect. 15 4
420 226.84 precipitation 0.1 270 < th dose independent rect. 24 10
421 226.84 precipitation 0.1 270 < th dose dependent rect. 15 4
422 226.84 precipitation 0.1 270 < th dose dependent rect. 24 10
435 226.94 atmosphere 995.0 270 > th dose independent rect. 19 20
450 227.05 humidity 90.0 270 < th dose independent rect. 15 4
451 227.06 wind 9.0 270 < th dose independent rect. 18 23
453 227.09 temperature 30.0 270 < th dose independent rect. 24 10
469 227.17 temperature 30.0 270 < th dose dependent rect. 23 1
470 227.17 wind 9.0 270 < th dose dependent rect. 21 3
484 227.25 humidity 50.0 270 > th dose independent rect. 20 18
495 227.29 atmosphere 1015.0 270 < th dose independent rect. 15 14
510 227.41 precipitation 0.1 270 < th dose independent rect. 20 18
513 227.41 precipitation 0.1 270 < th dose dependent rect. 20 18
520 227.49 precipitation 0.1 270 < th dose independent rect. 15 14
521 227.49 temperature 10.0 270 > th dose independent rect. 20 18
522 227.49 atmosphere 995.0 270 > th dose independent rect. 20 18
523 227.49 precipitation 0.1 270 < th dose dependent rect. 15 14
545 227.54 humidity 50.0 270 > th dose independent rect. 5 10
590 227.76 humidity 50.0 90 > th dose dependent rect. 2 10
599 227.79 atmosphere 995.0 270 > th dose independent rect. 14 6
600 227.79 wind 9.0 10 < th dose independent rect. 12 14
604 227.82 precipitation 0.1 270 < th dose independent rect. 24 21
606 227.82 precipitation 0.1 270 < th dose dependent rect. 24 21
623 227.93 wind 1.0 270 > th dose independent rect. 14 6
666 228.00 atmosphere 1015.0 90 < th dose independent rect. 3 18
702 228.09 temperature 15.0 90 > th dose dependent rect. 17 5
715 228.13 wind 9.0 270 < th dose independent rect. 15 4
745 228.26 wind 1.0 270 > th dose independent rect. 21 3
769 228.36 wind 9.0 30 < th dose dependent rect. 23 3
770 228.37 wind 5.0 30 < th dose independent rect. 23 3
869 228.70 temperature 10.0 1440 > th dose independent rect. 24 3
872 228.70 temperature 30.0 1440 < th dose independent rect. 24 3
876 228.70 humidity 50.0 1440 > th dose independent rect. 24 3
886 228.70 atmosphere 995.0 1440 > th dose independent rect. 24 3
887 228.70 radiation 1.0 1440 < th dose independent rect. 24 3
907 228.70 temperature 10.0 1440 > th dose independent rect. 3 21
910 228.70 radiation 1.0 1440 < th dose dependent rect. 24 3
924 228.75 temperature 10.0 30 > th dose independent rect. 23 3
925 228.75 temperature 30.0 30 < th dose independent rect. 23 3
926 228.75 humidity 50.0 30 > th dose independent rect. 23 3
929 228.75 atmosphere 995.0 30 > th dose independent rect. 23 3
930 228.75 radiation 1.0 30 < th dose independent rect. 23 3
936 228.75 temperature 10.0 30 > th dose independent rect. 2 21
938 228.75 atmosphere 1015.0 30 < th dose independent rect. 2 21
939 228.75 radiation 1.0 30 < th dose dependent rect. 23 3
944 228.76 precipitation 0.1 30 < th dose independent rect. 23 3
946 228.76 precipitation 0.1 30 < th dose dependent rect. 23 3
950 228.79 temperature 30.0 30 < th dose dependent rect. 23 3