Os08g0236900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0236900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.94 | 0.345 | 7.68 | 0.0719 | 0.402 | -1.32 | -0.712 | 0.67 | 0.15 | 8.8 | 24.23 | 783 | -- | -- |
| 54.4 | 0.344 | 7.67 | 0.168 | 0.409 | -1.41 | -0.542 | -- | 0.169 | 8.94 | 24.03 | 821 | -- | -- |
| 55.31 | 0.346 | 7.68 | 0.0989 | 0.38 | -1.4 | -- | 0.276 | 0.152 | 9.15 | 24.12 | 843 | -- | -- |
| 55.37 | 0.347 | 7.67 | 0.151 | 0.399 | -1.42 | -- | -- | 0.171 | 9.21 | 24.1 | 842 | -- | -- |
| 59.11 | 0.358 | 7.7 | -0.00136 | -- | -1.38 | -- | 0.668 | 0.122 | -- | 24.8 | 1412 | -- | -- |
| 82.45 | 0.426 | 7.61 | 0.563 | 0.26 | -- | -0.624 | -- | 0.441 | 7.67 | -- | -- | -- | -- |
| 83.52 | 0.428 | 7.61 | 0.548 | 0.259 | -- | -- | -- | 0.442 | 8.01 | -- | -- | -- | -- |
| 59.57 | 0.359 | 7.69 | 0.1 | -- | -1.46 | -- | -- | 0.148 | -- | 24.39 | 1405 | -- | -- |
| 55.89 | 0.348 | 7.68 | -- | 0.404 | -1.48 | -- | -- | 0.143 | 9.22 | 24.1 | 848 | -- | -- |
| 87.18 | 0.436 | 7.62 | 0.55 | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
| 91.43 | 0.447 | 7.63 | -- | 0.262 | -- | -- | -- | 0.381 | 7.86 | -- | -- | -- | -- |
| 59.84 | 0.36 | 7.69 | -- | -- | -1.52 | -- | -- | 0.131 | -- | 24.32 | 1419 | -- | -- |
| 95.17 | 0.455 | 7.63 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 51.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 3 | 51.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 6 | 52.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 67 | 53.04 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 87 | 53.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 95 | 53.30 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 102 | 53.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 111 | 53.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 168 | 53.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 193 | 53.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 212 | 53.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 226 | 53.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 338 | 53.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 555 | 54.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 718 | 54.45 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 722 | 54.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 794 | 54.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 813 | 54.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 907 | 54.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 988 | 54.87 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |