Os08g0235800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 25.
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Os08g0235800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 25.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.15 | 0.407 | 11.6 | 0.421 | 0.958 | -0.683 | 0.826 | 0.421 | 0.251 | 22 | 25.79 | 218 | -- | -- |
| 75.75 | 0.405 | 11.6 | 0.339 | 0.941 | -0.663 | 0.892 | -- | 0.192 | 21.9 | 26.1 | 218 | -- | -- |
| 77.8 | 0.411 | 11.6 | 0.381 | 0.956 | -0.69 | -- | 0.37 | 0.246 | 22 | 25.77 | 217 | -- | -- |
| 78.15 | 0.412 | 11.6 | 0.285 | 0.943 | -0.673 | -- | -- | 0.217 | 22 | 25.76 | 210 | -- | -- |
| 116.82 | 0.506 | 11.6 | 0.228 | -- | -0.669 | -- | -0.173 | 0.173 | -- | 25.9 | 47 | -- | -- |
| 95.89 | 0.459 | 11.7 | 0.12 | 1.02 | -- | 0.843 | -- | -0.0237 | 0.017 | -- | -- | -- | -- |
| 98.96 | 0.466 | 11.7 | 0.0864 | 1.02 | -- | -- | -- | -0.028 | 0.0882 | -- | -- | -- | -- |
| 116.94 | 0.506 | 11.6 | 0.266 | -- | -0.674 | -- | -- | 0.185 | -- | 25.9 | 34 | -- | -- |
| 80.19 | 0.417 | 11.6 | -- | 0.938 | -0.626 | -- | -- | 0.172 | 22.1 | 25.8 | 210 | -- | -- |
| 164.06 | 0.599 | 11.6 | 0.119 | -- | -- | -- | -- | -0.0133 | -- | -- | -- | -- | -- |
| 99.15 | 0.466 | 11.7 | -- | 1.02 | -- | -- | -- | -0.0376 | 0.0929 | -- | -- | -- | -- |
| 118.79 | 0.509 | 11.6 | -- | -- | -0.659 | -- | -- | 0.151 | -- | 25.9 | 34 | -- | -- |
| 164.44 | 0.599 | 11.6 | -- | -- | -- | -- | -- | -0.0265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 5 | 74.33 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 12 | 74.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 17 | 74.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 20 | 74.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 30 | 75.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 47 | 75.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 68 | 76.17 | temperature | 25 | 10 | > th | dose dependent | sin | 0 | NA |
| 71 | 76.19 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 91 | 76.39 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 174 | 77.34 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 205 | 77.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 209 | 77.58 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 213 | 77.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 222 | 77.63 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 17 |
| 231 | 77.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 260 | 77.77 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 19 |
| 265 | 77.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 311 | 77.96 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 322 | 78.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 420 | 78.48 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 426 | 78.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 441 | 78.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 482 | 78.66 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 15 |
| 499 | 78.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 524 | 78.81 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 555 | 78.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 608 | 79.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 638 | 79.15 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 654 | 79.20 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 9 |
| 716 | 79.38 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 720 | 79.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 721 | 79.40 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 734 | 79.42 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 823 | 79.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 914 | 79.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 923 | 79.86 | temperature | 25 | 90 | > th | dose independent | sin | 22 | NA |
| 943 | 79.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 945 | 79.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |