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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0235600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0142) R2 : 0.00194
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0282 (0.03) R2dN8 : 0.00251 R2N8 : 0.00194
σ : 0.268
deviance : 32.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.15 0.262 3.09 -0.0178 0.0948 -0.164 0.117 0.997 -0.0355 9.2 1.033 16 -- --
32 0.263 3.08 0.0212 0.0993 -0.0961 0.151 -- -0.0243 9.31 1.001 16 -- --
31.19 0.26 3.09 -0.0134 0.0969 -0.161 -- 1.01 -0.0357 8.76 1.028 16 -- --
32.05 0.264 3.08 0.0273 0.105 -0.0806 -- -- -0.0245 8.35 1.086 16 -- --
31.71 0.262 3.09 -0.0174 -- -0.179 -- 1.05 -0.0355 -- 1.052 16 -- --
32.18 0.266 3.08 0.0356 0.117 -- 0.0687 -- -0.0254 8.05 -- -- -- --
32.19 0.266 3.08 0.0371 0.118 -- -- -- -0.0257 7.73 -- -- -- --
32.66 0.266 3.08 0.0195 -- -0.0628 -- -- -0.0186 -- 1.7 19 -- --
32.07 0.264 3.08 -- 0.105 -0.0844 -- -- -0.0278 8.36 1.076 16 -- --
32.94 0.268 3.08 0.0386 -- -- -- -- -0.024 -- -- -- -- --
32.23 0.266 3.08 -- 0.118 -- -- -- -0.0298 7.71 -- -- -- --
32.66 0.266 3.08 -- -- -0.0739 -- -- -0.0195 -- 1.722 18 -- --
32.98 0.268 3.08 -- -- -- -- -- -0.0282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.93 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 27.96 atmosphere 1000.0 30 > th dose dependent rect. 2 1
6 28.01 wind 3.0 30 < th dose independent rect. 2 1
11 28.04 temperature 25.0 30 < th dose independent rect. 2 1
13 28.05 temperature 10.0 30 > th dose independent rect. 2 1
16 28.05 humidity 50.0 30 > th dose independent rect. 2 1
20 28.05 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 28.05 radiation 1.0 30 < th dose independent rect. 2 1
27 28.05 precipitation 0.1 30 < th dose independent rect. 2 1
28 28.05 temperature 10.0 30 > th dose independent rect. 3 23
29 28.05 wind 7.0 30 < th dose dependent rect. 2 1
33 28.05 radiation 1.0 30 < th dose dependent rect. 2 1
38 28.05 precipitation 0.1 30 < th dose dependent rect. 2 1
40 28.06 temperature 10.0 30 > th dose dependent rect. 2 1
42 28.08 humidity 50.0 30 > th dose dependent rect. 2 1
43 28.09 temperature 30.0 30 < th dose dependent rect. 2 1
51 28.18 wind 1.0 30 > th dose independent rect. 2 1
56 28.23 atmosphere 1015.0 30 < th dose dependent rect. 2 1
104 28.70 radiation 1.0 4320 < th dose dependent rect. 3 1
111 28.74 wind 9.0 1440 < th dose independent rect. 3 1
112 28.74 temperature 10.0 1440 > th dose independent rect. 3 1
115 28.74 temperature 30.0 1440 < th dose independent rect. 3 1
119 28.74 humidity 50.0 1440 > th dose independent rect. 3 1
128 28.74 atmosphere 995.0 1440 > th dose independent rect. 3 1
129 28.74 radiation 1.0 1440 < th dose independent rect. 3 1
149 28.74 temperature 10.0 1440 > th dose independent rect. 4 23
168 28.80 wind 9.0 30 < th dose independent rect. 3 23
172 28.88 atmosphere 1000.0 30 > th dose independent rect. 3 23
182 29.04 wind 7.0 720 > th dose independent rect. 22 1
188 29.07 precipitation 0.1 30 < th dose independent rect. 3 23
189 29.07 precipitation 0.1 30 < th dose dependent rect. 3 23
191 29.08 wind 7.0 720 > th dose dependent rect. 22 1
194 29.12 radiation 30.0 1440 > th dose independent rect. 16 1
216 29.19 wind 7.0 90 > th dose dependent rect. 22 1
225 29.29 radiation 10.0 1440 > th dose independent rect. 5 1
237 29.29 radiation 10.0 1440 > th dose dependent rect. 5 1
250 29.30 humidity 90.0 90 < th dose independent rect. 2 1
329 29.72 radiation 30.0 720 > th dose dependent rect. 16 1
345 29.76 humidity 90.0 90 < th dose independent rect. 1 3
369 30.04 temperature 30.0 30 < th dose independent rect. 3 23
379 30.12 humidity 50.0 30 > th dose independent rect. 3 23
386 30.15 atmosphere 1005.0 270 > th dose independent rect. 23 4
396 30.20 radiation 20.0 10 < th dose dependent rect. 3 23
397 30.21 humidity 90.0 270 < th dose independent rect. 23 4
438 30.34 wind 7.0 1440 < th dose independent rect. 22 2
442 30.36 temperature 25.0 270 > th dose independent rect. 23 4
510 30.44 wind 1.0 720 < th dose dependent rect. 12 2
529 30.48 temperature 25.0 270 > th dose dependent rect. 23 4
557 30.55 wind 9.0 4320 < th dose independent rect. 24 5
604 30.59 temperature 25.0 270 > th dose dependent rect. 23 1
607 30.60 radiation 10.0 30 < th dose independent rect. 3 23
610 30.61 atmosphere 1010.0 270 < th dose independent rect. 23 1
635 30.62 humidity 90.0 270 < th dose dependent rect. 24 1
647 30.65 radiation 30.0 1440 < th dose independent rect. 16 8
690 30.67 atmosphere 1010.0 90 < th dose independent rect. 23 4
708 30.70 atmosphere 1010.0 10 < th dose independent rect. 23 5
716 30.71 radiation 40.0 30 < th dose independent rect. 3 8
740 30.75 atmosphere 1015.0 90 < th dose independent rect. 11 16
753 30.76 radiation 30.0 1440 < th dose independent rect. 16 15
765 30.77 wind 5.0 10 < th dose dependent rect. 23 5
783 30.79 temperature 10.0 270 > th dose dependent rect. 23 1
792 30.80 wind 1.0 90 > th dose independent rect. 3 22
800 30.80 radiation 40.0 90 < th dose dependent rect. 3 7
828 30.81 humidity 50.0 90 > th dose dependent rect. 3 7
830 30.81 wind 9.0 30 < th dose dependent rect. 3 23
833 30.82 atmosphere 995.0 90 > th dose independent rect. 3 20
837 30.82 radiation 40.0 10 < th dose dependent rect. 4 7
839 30.83 wind 5.0 90 < th dose independent rect. 23 4
858 30.84 temperature 15.0 90 > th dose independent rect. 3 8
867 30.85 wind 7.0 90 < th dose independent rect. 3 8
868 30.85 humidity 70.0 10 > th dose independent rect. 3 8
870 30.85 precipitation 0.1 90 < th dose independent rect. 11 16
879 30.85 precipitation 0.1 90 < th dose dependent rect. 11 16
888 30.86 wind 7.0 90 < th dose dependent rect. 23 4
892 30.86 temperature 10.0 90 > th dose dependent rect. 23 4
898 30.87 radiation 30.0 1440 < th dose independent rect. 16 5
905 30.87 humidity 50.0 90 > th dose independent rect. 3 8
914 30.88 temperature 15.0 90 > th dose independent rect. 23 4
915 30.88 wind 1.0 270 > th dose independent rect. 22 5
918 30.88 humidity 70.0 90 > th dose independent rect. 3 7
919 30.88 atmosphere 1010.0 270 < th dose independent rect. 20 7
920 30.88 wind 7.0 90 < th dose independent rect. 3 20
924 30.88 wind 1.0 4320 < th dose dependent rect. 14 1
929 30.89 wind 1.0 270 > th dose independent rect. 23 1
930 30.89 wind 1.0 4320 < th dose independent rect. 14 1
938 30.89 radiation 40.0 90 < th dose independent rect. 11 16
941 30.89 wind 3.0 30 < th dose dependent rect. 2 6
942 30.90 temperature 15.0 270 > th dose independent rect. 23 1
943 30.90 humidity 60.0 720 > th dose independent rect. 14 1
949 30.90 atmosphere 995.0 90 > th dose independent rect. 3 8
950 30.90 atmosphere 1015.0 90 < th dose independent rect. 3 8
951 30.90 temperature 10.0 90 > th dose independent rect. 11 16
982 30.91 temperature 15.0 90 > th dose independent rect. 3 20
991 30.92 wind 1.0 4320 > th dose independent rect. 14 1
1000 30.92 atmosphere 1005.0 10 > th dose independent rect. 20 8