Os08g0234400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0234400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.28 | 0.526 | 3.9 | -2.25 | 0.202 | -0.193 | 0.391 | 3.46 | 0.669 | 23.7 | 0.5307 | 12347 | -- | -- |
| 140.15 | 0.551 | 3.83 | -1.72 | 0.217 | -0.355 | 0.399 | -- | 0.631 | 23.8 | 0.3585 | 12997 | -- | -- |
| 125.61 | 0.522 | 3.9 | -2.25 | 0.209 | -0.185 | -- | 3.46 | 0.671 | 23.7 | 0.5348 | 12221 | -- | -- |
| 134.22 | 0.54 | 3.83 | -1.77 | 0.198 | -0.685 | -- | -- | 0.764 | 22.6 | 0.3463 | 12899 | -- | -- |
| 126.76 | 0.524 | 3.91 | -2.31 | -- | -0.0717 | -- | 3.53 | 0.616 | -- | 0.5926 | 19381 | -- | -- |
| 144.77 | 0.564 | 3.78 | -1.4 | 0.208 | -- | 0.28 | -- | 0.911 | 23.8 | -- | -- | -- | -- |
| 145.04 | 0.564 | 3.78 | -1.41 | 0.21 | -- | -- | -- | 0.911 | 23.1 | -- | -- | -- | -- |
| 134.34 | 0.54 | 3.82 | -1.73 | -- | -0.874 | -- | -- | 0.774 | -- | 0.3502 | 11218 | -- | -- |
| 193.97 | 0.649 | 3.76 | -- | 0.174 | -0.357 | -- | -- | 0.999 | 22.3 | 8.492 | 8683 | -- | -- |
| 147.8 | 0.568 | 3.78 | -1.41 | -- | -- | -- | -- | 0.912 | -- | -- | -- | -- | -- |
| 197.79 | 0.658 | 3.75 | -- | 0.199 | -- | -- | -- | 1.07 | 22.7 | -- | -- | -- | -- |
| 194.86 | 0.65 | 3.76 | -- | -- | -0.502 | -- | -- | 0.99 | -- | 8.491 | 9703 | -- | -- |
| 200.22 | 0.66 | 3.74 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 118.78 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 5 | 119.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 12 | 119.66 | wind | 7 | 43200 | < th | dose dependent | rect. | 14 | 13 |
| 21 | 119.79 | temperature | 15 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 22 | 119.81 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 34 | 119.87 | temperature | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 40 | 119.89 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 41 | 119.89 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 52 | 119.92 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 67 | 119.94 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 70 | 119.95 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 79 | 119.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 103 | 119.98 | wind | 5 | 43200 | < th | dose dependent | sin | 17 | NA |
| 142 | 120.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 197 | 120.07 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 0 | NA |
| 266 | 120.13 | atmosphere | 1000 | 43200 | > th | dose dependent | sin | 3 | NA |
| 322 | 120.17 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 323 | 120.17 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 417 | 120.21 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 0 | NA |
| 567 | 120.27 | wind | 3 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 660 | 120.30 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 725 | 120.32 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 764 | 120.33 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 807 | 120.34 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 896 | 120.36 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 1 | NA |
| 962 | 120.37 | atmosphere | 1000 | 43200 | > th | dose dependent | no | NA | NA |