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Os08g0233600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0219) R2 : 0.663
β1 : 1.62 (0.0801) R2dD : 0.313 R2D : 0.21
β2 : 0.99 (0.0519) R2dC : 0.27 R2C : 0.243
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.642 (0.0467) R2dN8 : 0.187 R2N8 : 0.0688
σ : 0.411
deviance : 77.17
__
_____
C
peak time of C : 0.287
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.39 0.368 10.2 0.769 0.96 -0.757 -0.648 2.03 0.34 0.0728 24.8 4623 -- --
59.84 0.36 10.2 1.24 0.964 -0.706 -0.595 -- 0.368 0.0725 22.1 3260 -- --
62.95 0.37 10.2 0.784 0.936 -0.685 -- 2.35 0.38 0.215 25.5 5071 -- --
61.29 0.365 10.2 1.26 0.965 -0.706 -- -- 0.38 0.283 22.14 3254 -- --
112.28 0.494 10.2 0.667 -- -1 -- 2.32 0.308 -- 25.3 3916 -- --
75.54 0.407 10.1 1.6 0.986 -- -0.634 -- 0.64 0.103 -- -- -- --
77.17 0.411 10.1 1.62 0.99 -- -- -- 0.642 0.287 -- -- -- --
104.57 0.476 10.2 1.45 -- -0.925 -- -- 0.389 -- 24.84 979 -- --
62.88 0.369 10.2 -- 0.966 -1.43 -- -- 0.11 0.265 18.64 47520 -- --
138.79 0.55 10.1 1.65 -- -- -- -- 0.658 -- -- -- -- --
146.27 0.566 10.1 -- 1.01 -- -- -- 0.462 0.372 -- -- -- --
121.54 0.513 10.2 -- -- -1.48 -- -- 0.11 -- 18.7 47520 -- --
210.78 0.678 10.1 -- -- -- -- -- 0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.46 atmosphere 1015 43200 < th dose independent rect. 18 2
3 53.97 atmosphere 1015 43200 > th dose independent rect. 14 7
5 54.02 atmosphere 1015 43200 < th dose independent rect. 14 6
9 54.21 atmosphere 1015 43200 > th dose dependent rect. 11 11
13 54.26 atmosphere 1015 43200 > th dose dependent rect. 12 5
19 54.35 atmosphere 1015 43200 > th dose dependent rect. 13 1
24 54.40 atmosphere 1015 43200 > th dose dependent rect. 18 4
28 54.43 atmosphere 1015 43200 > th dose dependent rect. 16 7
40 54.55 atmosphere 1015 43200 > th dose independent rect. 14 1
79 55.06 atmosphere 1015 43200 > th dose dependent sin 17 NA
101 55.45 wind 1 43200 < th dose dependent rect. 6 2
118 55.73 radiation 1 14400 > th dose independent rect. 9 3
119 55.73 radiation 1 14400 < th dose independent rect. 9 3
121 55.76 radiation 1 14400 < th dose independent rect. 8 5
125 55.80 radiation 1 14400 > th dose independent rect. 8 5
134 55.96 radiation 40 43200 < th dose independent rect. 13 19
148 56.06 radiation 30 43200 > th dose dependent rect. 13 20
149 56.08 radiation 40 43200 < th dose dependent rect. 18 14
151 56.09 radiation 40 43200 < th dose independent rect. 13 7
152 56.09 radiation 30 14400 < th dose independent rect. 24 7
161 56.10 radiation 40 43200 < th dose independent rect. 13 4
171 56.11 radiation 20 43200 < th dose dependent rect. 18 14
172 56.11 radiation 1 43200 > th dose dependent rect. 17 15
179 56.14 radiation 30 14400 < th dose independent rect. 3 4
184 56.16 radiation 40 43200 < th dose independent sin 13 NA
191 56.20 radiation 30 43200 > th dose dependent rect. 15 18
193 56.25 radiation 30 43200 > th dose independent rect. 7 2
208 56.25 radiation 40 43200 < th dose dependent rect. 4 4
210 56.25 radiation 40 43200 < th dose dependent rect. 22 10
211 56.25 radiation 40 43200 < th dose dependent rect. 20 12
238 56.28 radiation 10 43200 < th dose dependent rect. 4 4
241 56.28 radiation 10 43200 < th dose dependent rect. 24 8
274 56.31 radiation 1 43200 > th dose dependent rect. 4 4
290 56.32 temperature 15 43200 > th dose independent rect. 3 1
292 56.32 radiation 10 43200 > th dose dependent rect. 7 1
293 56.32 radiation 30 43200 > th dose dependent rect. 7 2
316 56.34 radiation 40 43200 < th dose dependent rect. 7 1
317 56.34 radiation 40 43200 > th dose dependent rect. 13 2
344 56.35 radiation 40 43200 < th dose dependent rect. 16 17
346 56.36 humidity 60 43200 < th dose independent rect. 9 1
372 56.37 radiation 30 43200 > th dose dependent sin 13 NA
411 56.44 radiation 1 43200 > th dose dependent sin 12 NA
420 56.45 radiation 10 43200 < th dose independent rect. 7 1
558 56.54 radiation 40 43200 < th dose dependent sin 12 NA
562 56.55 radiation 20 43200 < th dose independent rect. 14 2
591 56.58 humidity 60 43200 > th dose independent rect. 9 1
697 56.65 radiation 10 43200 < th dose independent rect. 11 21
710 56.66 radiation 10 43200 < th dose independent rect. 18 14
721 56.67 radiation 10 43200 < th dose independent rect. 9 23
739 56.69 radiation 1 43200 < th dose dependent rect. 9 2
744 56.70 radiation 1 43200 > th dose independent rect. 10 1
745 56.70 radiation 1 43200 < th dose independent rect. 10 1
746 56.70 radiation 10 43200 < th dose independent rect. 18 16
776 56.73 temperature 15 43200 < th dose independent rect. 2 2
798 56.74 radiation 10 43200 < th dose independent no NA NA
801 56.74 radiation 10 43200 < th dose independent rect. 4 15
875 56.76 radiation 10 43200 < th dose independent rect. 6 23
898 56.77 radiation 10 43200 < th dose independent rect. 18 23
903 56.78 radiation 10 43200 < th dose independent rect. 4 4
905 56.78 radiation 10 43200 < th dose independent rect. 22 10