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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0231400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.55 (0.116) R2 : 0.603
β1 : -2.82 (0.438) R2dD : 0.042 R2D : 0.0675
β2 : 5.66 (0.286) R2dC : 0.347 R2C : 0.247
β3 : -4.92 (0.366) R2dE : 0.18 R2E : 0.0299
β4 : -3.44 (1.21) R2dD*C : 0.00713 R2D*C : -0.0329
β5 : 11.5 (1.49) R2dD*E : 0.0602 R2D*E : 0.0343
γ1 : 2.09 (0.258) R2dN8 : 0.0872 R2N8 : 0.0197
σ : 2.13
deviance : 2056.93
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C
peak time of C : 3.31
E
wheather : radiation
threshold : 11.05
memory length : 1422
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.8
open length of G : 0.667

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2056.93 2.13 5.55 -2.82 5.66 -4.92 -3.44 11.5 2.09 3.31 11.05 1422 11.8 0.667
2328.54 2.25 5.67 -3.63 5.97 -4.63 -1.97 -- 1.82 3.3 10.87 1423 11.9 0.65
2091.19 2.13 5.54 -2.79 5.64 -4.99 -- 10.8 2.17 3.22 11.16 1422 11.8 0.683
2327.17 2.25 5.67 -3.74 5.61 -4.66 -- -- 1.69 3.23 10.78 1424 11.9 0.647
3011.97 2.56 5.73 -2.58 -- -4.91 -- 11.1 2.23 -- 22.14 1959 11.9 0.55
3048.81 2.59 5.94 -4.63 5.12 -- -2.13 -- 0.731 3.38 -- -- -- --
3062.35 2.59 5.93 -4.59 5.1 -- -- -- 0.744 3.29 -- -- -- --
2995.38 2.55 5.51 -3.38 -- -6.97 -- -- 2.62 -- -10.87 1922 11.2 1.85
2687.47 2.41 5.6 -- 5.57 -5.22 -- -- 2.22 3.19 10.45 1423 11.8 0.709
4530.44 3.15 5.93 -4.37 -- -- -- -- 0.878 -- -- -- -- --
3617.33 2.81 5.82 -- 5.01 -- -- -- 1.25 3.29 -- -- -- --
3383.38 2.71 5.55 -- -- -7.18 -- -- 2.68 -- -16.73 1918 11.2 1.98
5034.8 3.31 5.82 -- -- -- -- -- 1.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2244.51 humidity 90.0 14400 < th dose independent rect. 13 1
2 2275.31 radiation 20.0 1440 < th dose independent rect. 11 2
3 2291.57 radiation 10.0 1440 > th dose dependent rect. 12 1
4 2292.66 precipitation 0.1 14400 > th dose independent rect. 14 1
5 2292.66 precipitation 0.1 14400 > th dose dependent rect. 14 1
7 2296.91 humidity 90.0 14400 > th dose independent rect. 13 2
9 2301.38 wind 1.0 43200 > th dose dependent rect. 1 3
10 2305.46 wind 9.0 43200 < th dose dependent rect. 1 3
14 2314.58 wind 3.0 14400 > th dose independent rect. 14 1
16 2316.77 radiation 40.0 1440 < th dose dependent rect. 12 1
18 2317.76 wind 3.0 14400 < th dose independent rect. 14 1
19 2318.80 temperature 20.0 720 > th dose independent rect. 19 4
25 2323.66 temperature 20.0 270 > th dose independent rect. 19 12
30 2327.39 radiation 20.0 1440 < th dose independent rect. 11 22
44 2336.62 wind 3.0 43200 > th dose dependent rect. 1 9
46 2336.98 radiation 20.0 1440 < th dose independent rect. 1 14
47 2337.07 radiation 20.0 1440 < th dose independent rect. 6 9
48 2337.13 radiation 20.0 1440 < th dose independent rect. 21 18
49 2337.17 radiation 20.0 1440 < th dose independent rect. 3 12
52 2337.23 radiation 20.0 1440 < th dose independent rect. 17 22
53 2337.34 radiation 20.0 1440 < th dose independent rect. 23 16
79 2340.31 precipitation 0.1 14400 < th dose independent rect. 14 1
80 2340.31 precipitation 0.1 14400 < th dose dependent rect. 14 1
139 2349.71 radiation 1.0 1440 > th dose dependent rect. 12 21
162 2355.26 radiation 20.0 1440 < th dose independent sin 3 NA
170 2356.60 radiation 20.0 1440 < th dose dependent rect. 17 22
172 2356.94 radiation 30.0 1440 < th dose dependent rect. 11 22
177 2357.83 humidity 80.0 720 > th dose independent rect. 19 2
178 2357.95 radiation 40.0 1440 > th dose independent rect. 12 3
194 2360.73 precipitation 0.1 14400 < th dose independent rect. 9 6
195 2360.73 precipitation 0.1 14400 < th dose dependent rect. 9 6
203 2362.08 radiation 30.0 1440 < th dose dependent rect. 6 9
215 2363.71 wind 3.0 43200 > th dose dependent rect. 5 1
221 2364.19 precipitation 0.1 14400 > th dose independent rect. 9 6
223 2364.89 radiation 40.0 1440 > th dose independent rect. 12 21
242 2365.29 wind 5.0 14400 < th dose dependent rect. 14 1
254 2367.05 radiation 30.0 1440 < th dose dependent rect. 1 14
255 2367.16 radiation 30.0 1440 < th dose dependent rect. 21 18
258 2367.24 radiation 30.0 1440 < th dose dependent rect. 3 12
261 2367.40 radiation 30.0 1440 < th dose dependent rect. 23 16
268 2367.76 wind 9.0 43200 > th dose dependent rect. 11 2
269 2367.84 humidity 80.0 43200 > th dose dependent rect. 11 3
297 2371.57 humidity 90.0 14400 > th dose dependent rect. 13 3
345 2374.22 radiation 20.0 1440 < th dose independent rect. 1 23
349 2374.28 radiation 20.0 1440 < th dose independent rect. 6 18
356 2374.35 radiation 20.0 1440 < th dose independent rect. 3 21
375 2374.54 radiation 20.0 1440 < th dose independent rect. 6 22
378 2374.56 radiation 20.0 1440 < th dose independent rect. 6 16
398 2374.72 radiation 20.0 1440 < th dose independent rect. 23 23
404 2374.78 radiation 20.0 1440 < th dose independent no NA NA
431 2375.16 radiation 20.0 1440 < th dose independent rect. 14 23
435 2375.23 temperature 20.0 10 > th dose independent rect. 20 8
452 2376.07 humidity 80.0 43200 > th dose dependent rect. 12 1
473 2377.67 wind 5.0 43200 < th dose independent rect. 1 12
498 2379.16 wind 5.0 43200 < th dose independent rect. 3 8
523 2380.57 radiation 20.0 1440 < th dose dependent sin 2 NA
544 2382.42 wind 3.0 43200 > th dose dependent sin 7 NA
554 2382.89 wind 3.0 43200 > th dose dependent rect. 7 1
557 2383.15 wind 9.0 43200 > th dose independent rect. 12 1
564 2383.46 humidity 80.0 720 < th dose dependent rect. 18 14
580 2384.13 wind 5.0 43200 > th dose independent rect. 1 12
639 2386.73 wind 5.0 43200 > th dose independent rect. 3 8
648 2387.28 radiation 20.0 1440 < th dose dependent rect. 6 18
652 2387.55 radiation 20.0 1440 < th dose dependent rect. 6 22
656 2387.64 radiation 20.0 1440 < th dose dependent rect. 6 16
660 2387.72 radiation 20.0 1440 < th dose dependent rect. 6 20
756 2390.49 humidity 80.0 720 < th dose dependent rect. 18 9
793 2391.37 radiation 30.0 1440 < th dose dependent rect. 1 23
799 2391.51 radiation 30.0 1440 < th dose dependent rect. 3 21
805 2391.61 wind 9.0 43200 < th dose independent rect. 9 4
806 2391.62 wind 9.0 43200 < th dose independent rect. 10 2
827 2391.91 radiation 30.0 1440 < th dose dependent rect. 23 23
835 2392.00 radiation 30.0 1440 < th dose dependent no NA NA
892 2392.62 wind 5.0 43200 > th dose dependent rect. 10 1
897 2392.70 temperature 20.0 90 < th dose independent rect. 19 15
920 2393.47 humidity 80.0 720 < th dose dependent rect. 19 5
926 2393.97 temperature 25.0 43200 < th dose dependent rect. 9 2
965 2395.42 temperature 20.0 270 > th dose independent sin 12 NA