Os08g0230300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os08g0230300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.78 | 0.669 | 3.08 | -0.0272 | 0.143 | -2.58 | -0.695 | 0.0846 | 0.0816 | 6.39 | 9.015 | 19 | -- | -- |
| 202.78 | 0.663 | 3.08 | -0.0267 | 0.143 | -2.6 | -0.69 | -- | 0.0813 | 6.37 | 9.021 | 18 | -- | -- |
| 203.86 | 0.665 | 3.08 | -0.0393 | 0.148 | -2.42 | -- | 0.314 | 0.0812 | 7.42 | 9.071 | 18 | -- | -- |
| 203.85 | 0.665 | 3.08 | -0.0409 | 0.144 | -2.49 | -- | -- | 0.082 | 7.54 | 9.057 | 18 | -- | -- |
| 204.96 | 0.667 | 3.08 | -0.0402 | -- | -2.43 | -- | 0.136 | 0.0838 | -- | 9 | 18 | -- | -- |
| 217.28 | 0.691 | 3.09 | -0.177 | 0.143 | -- | -0.358 | -- | 0.0282 | 9.09 | -- | -- | -- | -- |
| 217.7 | 0.691 | 3.09 | -0.188 | 0.144 | -- | -- | -- | 0.0285 | 9.66 | -- | -- | -- | -- |
| 204.96 | 0.667 | 3.08 | -0.04 | -- | -2.47 | -- | -- | 0.0839 | -- | 9.063 | 18 | -- | -- |
| 203.89 | 0.665 | 3.08 | -- | 0.144 | -2.52 | -- | -- | 0.0871 | 7.53 | 9.057 | 18 | -- | -- |
| 218.93 | 0.691 | 3.09 | -0.189 | -- | -- | -- | -- | 0.0287 | -- | -- | -- | -- | -- |
| 218.63 | 0.692 | 3.08 | -- | 0.145 | -- | -- | -- | 0.0494 | 9.76 | -- | -- | -- | -- |
| 205 | 0.667 | 3.08 | -- | -- | -2.5 | -- | -- | 0.0886 | -- | 9.064 | 18 | -- | -- |
| 219.87 | 0.692 | 3.09 | -- | -- | -- | -- | -- | 0.0497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.12 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 21 | 199.36 | wind | 9 | 30 | > th | dose dependent | sin | 6 | NA |
| 31 | 199.95 | wind | 9 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 72 | 201.17 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 78 | 201.35 | wind | 9 | 30 | < th | dose independent | sin | 5 | NA |
| 103 | 201.60 | wind | 9 | 30 | > th | dose independent | sin | 5 | NA |
| 144 | 201.95 | wind | 9 | 30 | > th | dose independent | rect. | 18 | 18 |
| 202 | 203.21 | radiation | 10 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 286 | 204.83 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 2 |
| 288 | 204.87 | wind | 9 | 30 | < th | dose independent | rect. | 23 | 23 |
| 325 | 205.21 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 9 |
| 427 | 206.04 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 430 | 206.04 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 433 | 206.05 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 437 | 206.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 12 |
| 441 | 206.15 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 491 | 206.15 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 23 |
| 497 | 206.16 | radiation | 10 | 90 | < th | dose independent | rect. | 10 | 1 |
| 522 | 206.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 533 | 206.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 561 | 206.98 | radiation | 10 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 573 | 207.08 | wind | 3 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 628 | 207.23 | wind | 7 | 30 | < th | dose independent | rect. | 3 | 23 |
| 680 | 207.67 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 782 | 208.24 | wind | 3 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 808 | 208.35 | radiation | 10 | 270 | < th | dose independent | rect. | 8 | 3 |
| 828 | 208.47 | wind | 7 | 30 | > th | dose dependent | rect. | 9 | 12 |
| 865 | 208.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 6 |