Os08g0229200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0229200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.76 | 0.331 | 12.4 | -1.66 | 1.11 | -1.17 | -0.24 | -0.349 | -0.651 | 22.1 | 28.88 | 34 | -- | -- |
| 49.94 | 0.329 | 12.4 | -1.71 | 1.11 | -1.16 | -0.248 | -- | -0.664 | 22.1 | 28.96 | 36 | -- | -- |
| 49.96 | 0.329 | 12.4 | -1.64 | 1.12 | -1.17 | -- | -0.434 | -0.65 | 22.1 | 28.59 | 34 | -- | -- |
| 50.21 | 0.33 | 12.4 | -1.72 | 1.1 | -1.18 | -- | -- | -0.67 | 22.1 | 28.89 | 52 | -- | -- |
| 78.77 | 0.413 | 12.4 | -1.92 | -- | -1.81 | -- | 0.475 | -0.727 | -- | 34.59 | 667 | -- | -- |
| 68.8 | 0.389 | 12.3 | -1.43 | 1.01 | -- | -0.384 | -- | -0.422 | 20.8 | -- | -- | -- | -- |
| 69.3 | 0.39 | 12.3 | -1.42 | 1.01 | -- | -- | -- | -0.422 | 20.8 | -- | -- | -- | -- |
| 78.92 | 0.414 | 12.4 | -1.85 | -- | -1.76 | -- | -- | -0.694 | -- | 48.34 | 677 | -- | -- |
| 119.04 | 0.511 | 12.3 | -- | 1.04 | -0.505 | -- | -- | -0.335 | 21.2 | 32.1 | 3 | -- | -- |
| 127.01 | 0.527 | 12.3 | -1.42 | -- | -- | -- | -- | -0.43 | -- | -- | -- | -- | -- |
| 122.4 | 0.518 | 12.3 | -- | 1.01 | -- | -- | -- | -0.264 | 20.7 | -- | -- | -- | -- |
| 160.75 | 0.591 | 12.3 | -- | -- | -1.07 | -- | -- | -0.403 | -- | 36.42 | 628 | -- | -- |
| 180.27 | 0.627 | 12.3 | -- | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.00 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 49.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 49.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 7 | 49.78 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 8 | 49.82 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 49.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 11 | 49.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 49.92 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 18 | 50.13 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 50.20 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 22 | 50.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 23 | 50.25 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 24 | 50.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 38 | 50.62 | temperature | 15.0 | 30 | > th | dose dependent | no | NA | NA |
| 39 | 50.62 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 46 | 50.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 51 | 50.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 56 | 50.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 94 | 51.14 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 98 | 51.18 | temperature | 20.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 133 | 51.37 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 173 | 51.61 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 186 | 51.71 | temperature | 30.0 | 30 | < th | dose dependent | sin | 6 | NA |
| 222 | 51.89 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 233 | 51.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 282 | 52.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 293 | 52.20 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 334 | 52.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 335 | 52.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 336 | 52.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 343 | 52.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 437 | 52.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 462 | 52.63 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 470 | 52.64 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 512 | 52.71 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 516 | 52.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 599 | 52.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 609 | 52.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 619 | 52.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 625 | 52.93 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 647 | 52.97 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 695 | 53.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 714 | 53.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 767 | 53.19 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 796 | 53.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 805 | 53.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 839 | 53.31 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 862 | 53.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 929 | 53.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 951 | 53.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 955 | 53.45 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 957 | 53.46 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 972 | 53.47 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |