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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0228100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0158) R2 : 0.00289
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0383 (0.0333) R2dN8 : 0.00373 R2N8 : 0.00289
σ : 0.298
deviance : 40.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.94 0.293 2.92 0.024 0.079 -0.18 -0.369 0.132 0.0367 4.4 1010 10 -- --
39 0.293 2.92 0.0152 0.0806 -0.184 -0.368 -- 0.0354 4.51 1010 10 -- --
39.3 0.294 2.92 0.0269 0.079 -0.182 -- 0.126 0.0387 5.07 1010 9 -- --
39.35 0.294 2.92 0.018 0.0798 -0.186 -- -- 0.0373 5.06 1010 9 -- --
39.63 0.295 2.92 0.0306 -- -0.19 -- 0.134 0.0408 -- 1010 9 -- --
40.02 0.297 2.92 0.00843 0.0914 -- -0.394 -- 0.0355 4.89 -- -- -- --
40.39 0.298 2.92 0.01 0.0924 -- -- -- 0.0376 5.76 -- -- -- --
39.69 0.295 2.92 0.0212 -- -0.194 -- -- 0.0394 -- 1010 9 -- --
39.36 0.294 2.92 -- 0.0801 -0.186 -- -- 0.0353 5.05 1010 8 -- --
40.83 0.299 2.92 0.0129 -- -- -- -- 0.0398 -- -- -- -- --
40.39 0.297 2.92 -- 0.0926 -- -- -- 0.0365 5.76 -- -- -- --
39.7 0.294 2.92 -- -- -0.193 -- -- 0.037 -- 1010 9 -- --
40.84 0.298 2.92 -- -- -- -- -- 0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.90 temperature 20.0 30 > th dose dependent rect. 2 1
2 34.97 temperature 20.0 30 > th dose independent rect. 2 1
3 34.98 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 35.06 wind 3.0 30 < th dose dependent rect. 2 1
8 35.07 atmosphere 1005.0 30 > th dose independent rect. 2 1
12 35.12 wind 3.0 30 < th dose independent rect. 2 1
14 35.14 humidity 90.0 30 > th dose independent rect. 2 1
19 35.17 humidity 50.0 30 > th dose dependent rect. 2 1
23 35.18 temperature 10.0 30 > th dose independent rect. 2 1
25 35.18 temperature 30.0 30 < th dose independent rect. 2 1
26 35.18 humidity 50.0 30 > th dose independent rect. 2 1
30 35.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 35.18 radiation 1.0 30 < th dose independent rect. 2 1
37 35.18 precipitation 0.1 30 < th dose independent rect. 2 1
38 35.18 temperature 10.0 30 > th dose independent rect. 3 23
40 35.18 radiation 1.0 30 < th dose dependent rect. 2 1
45 35.18 precipitation 0.1 30 < th dose dependent rect. 2 1
49 35.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
53 35.62 temperature 30.0 30 < th dose dependent rect. 2 1
55 35.76 wind 1.0 30 > th dose independent rect. 2 1
73 36.26 wind 9.0 30 < th dose independent rect. 3 23
100 36.44 radiation 10.0 43200 < th dose dependent rect. 3 1
108 36.47 wind 9.0 1440 < th dose independent rect. 3 1
109 36.47 temperature 10.0 1440 > th dose independent rect. 3 1
112 36.47 temperature 30.0 1440 < th dose independent rect. 3 1
116 36.47 humidity 50.0 1440 > th dose independent rect. 3 1
125 36.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
126 36.47 radiation 1.0 1440 < th dose independent rect. 3 1
146 36.47 temperature 10.0 1440 > th dose independent rect. 4 23
149 36.47 radiation 1.0 1440 < th dose dependent rect. 3 1
162 36.67 radiation 10.0 10 > th dose independent rect. 6 1
188 36.67 radiation 10.0 10 > th dose dependent rect. 6 1
219 37.23 precipitation 0.1 30 < th dose independent rect. 3 23
220 37.23 precipitation 0.1 30 < th dose dependent rect. 3 23
221 37.24 atmosphere 995.0 30 > th dose independent rect. 3 23
223 37.30 temperature 25.0 90 > th dose dependent rect. 1 3
240 37.69 temperature 20.0 30 > th dose dependent rect. 2 5
252 37.91 atmosphere 1010.0 10 < th dose independent rect. 3 23
255 37.96 wind 3.0 30 < th dose dependent rect. 6 1
258 37.99 atmosphere 1005.0 30 > th dose dependent rect. 6 1
269 38.16 atmosphere 1005.0 30 > th dose dependent rect. 2 5
286 38.29 humidity 80.0 30 > th dose dependent rect. 6 1
306 38.43 wind 3.0 30 < th dose dependent rect. 2 5
310 38.45 humidity 50.0 30 > th dose independent rect. 3 23
313 38.47 atmosphere 1010.0 10 < th dose independent rect. 3 8
314 38.47 temperature 15.0 30 > th dose independent rect. 7 23
315 38.47 temperature 30.0 30 < th dose dependent rect. 6 1
319 38.47 atmosphere 1005.0 270 > th dose dependent rect. 23 6
321 38.49 temperature 25.0 720 > th dose independent rect. 20 2
324 38.51 precipitation 0.1 720 < th dose independent rect. 7 8
326 38.51 precipitation 0.1 720 < th dose dependent rect. 7 8
327 38.52 temperature 25.0 720 < th dose independent rect. 20 6
331 38.54 temperature 30.0 30 < th dose independent rect. 3 23
337 38.55 temperature 25.0 720 > th dose independent rect. 19 7
346 38.57 wind 3.0 30 < th dose independent rect. 6 1
348 38.57 precipitation 0.1 720 < th dose independent rect. 3 16
350 38.57 atmosphere 1010.0 10 < th dose independent rect. 12 23
353 38.57 precipitation 0.1 720 < th dose dependent rect. 3 16
354 38.58 radiation 1.0 1440 > th dose independent rect. 12 1
359 38.59 atmosphere 1010.0 10 < th dose independent rect. 23 12
389 38.65 atmosphere 1010.0 10 < th dose independent rect. 16 19
395 38.66 atmosphere 1010.0 10 < th dose independent sin 7 NA
397 38.66 temperature 20.0 30 > th dose independent rect. 6 1
401 38.67 wind 9.0 1440 < th dose independent rect. 7 1
403 38.67 temperature 10.0 1440 > th dose independent rect. 7 1
407 38.67 temperature 30.0 1440 < th dose independent rect. 7 1
411 38.67 humidity 50.0 1440 > th dose independent rect. 7 1
416 38.67 atmosphere 995.0 1440 > th dose independent rect. 7 1
417 38.67 atmosphere 1015.0 1440 < th dose independent rect. 7 1
421 38.67 temperature 10.0 1440 > th dose independent rect. 8 23
433 38.69 temperature 25.0 720 > th dose dependent rect. 19 3
435 38.70 humidity 80.0 30 > th dose independent rect. 6 1
436 38.70 humidity 90.0 30 < th dose independent rect. 6 1
437 38.70 atmosphere 1005.0 30 > th dose independent rect. 6 1
456 38.73 wind 1.0 30 > th dose independent rect. 6 1
460 38.73 temperature 10.0 30 > th dose independent rect. 6 1
462 38.73 temperature 30.0 30 < th dose independent rect. 6 1
463 38.73 humidity 50.0 30 > th dose independent rect. 6 1
466 38.73 atmosphere 995.0 30 > th dose independent rect. 6 1
468 38.73 atmosphere 1015.0 30 < th dose independent rect. 6 1
469 38.73 radiation 20.0 30 < th dose independent rect. 6 1
472 38.73 precipitation 0.1 30 < th dose independent rect. 6 1
475 38.73 precipitation 0.1 30 < th dose dependent rect. 6 1
479 38.74 atmosphere 1010.0 10 < th dose independent rect. 14 21
481 38.75 temperature 25.0 720 < th dose independent rect. 21 2
490 38.76 temperature 20.0 10 > th dose independent rect. 2 5
493 38.76 temperature 15.0 10 > th dose independent rect. 14 12
501 38.78 temperature 15.0 10 > th dose independent rect. 16 10
518 38.80 atmosphere 1010.0 10 < th dose independent rect. 18 17
528 38.81 atmosphere 1010.0 10 < th dose independent rect. 20 15
529 38.81 temperature 15.0 30 > th dose independent rect. 7 19
530 38.81 wind 9.0 30 < th dose independent rect. 7 23
531 38.81 temperature 10.0 30 > th dose dependent rect. 6 1
534 38.82 temperature 15.0 720 > th dose independent rect. 14 1
571 38.86 radiation 40.0 30 < th dose dependent rect. 6 1
590 38.88 atmosphere 1010.0 10 < th dose independent rect. 23 23
610 38.89 radiation 1.0 1440 < th dose independent rect. 12 1
625 38.89 radiation 1.0 1440 < th dose dependent rect. 12 1
628 38.89 wind 3.0 30 < th dose dependent rect. 2 3
656 38.92 radiation 10.0 30 < th dose independent rect. 3 23
657 38.92 radiation 20.0 10 < th dose dependent rect. 6 1
669 38.93 temperature 15.0 720 > th dose independent rect. 12 7
670 38.93 wind 9.0 720 < th dose independent rect. 19 8
675 38.93 temperature 15.0 30 > th dose independent rect. 5 21
699 38.94 temperature 15.0 1440 > th dose independent rect. 13 9
706 38.95 atmosphere 1010.0 10 < th dose independent no NA NA
714 38.95 temperature 25.0 720 > th dose dependent rect. 5 3
723 38.96 temperature 15.0 720 > th dose independent rect. 7 8
736 38.96 temperature 20.0 720 < th dose dependent rect. 5 15
756 38.98 temperature 20.0 720 < th dose dependent sin 23 NA
760 38.98 temperature 10.0 30 > th dose dependent rect. 3 23
767 38.99 atmosphere 995.0 720 > th dose independent rect. 7 8
768 38.99 atmosphere 1015.0 720 < th dose independent rect. 7 8
773 38.99 temperature 10.0 720 > th dose independent rect. 15 16
774 38.99 atmosphere 995.0 720 > th dose independent rect. 15 16
791 39.00 temperature 15.0 270 > th dose independent rect. 12 23
812 39.01 atmosphere 995.0 720 > th dose independent rect. 3 16
821 39.02 wind 1.0 10 < th dose independent rect. 2 5
822 39.02 temperature 10.0 720 > th dose independent rect. 19 8
825 39.02 humidity 50.0 720 > th dose independent rect. 19 8
826 39.02 atmosphere 995.0 720 > th dose independent rect. 19 8
827 39.02 radiation 1.0 720 < th dose independent rect. 19 8
832 39.02 precipitation 0.1 720 < th dose independent rect. 19 8
835 39.02 temperature 10.0 720 > th dose independent rect. 3 16
843 39.02 radiation 1.0 720 < th dose dependent rect. 19 8
848 39.02 precipitation 0.1 720 < th dose dependent rect. 19 8
856 39.03 atmosphere 1005.0 30 > th dose independent rect. 2 5
872 39.04 precipitation 0.1 720 < th dose independent rect. 23 16
886 39.04 precipitation 0.1 720 < th dose dependent rect. 23 16
895 39.05 temperature 15.0 720 > th dose independent rect. 16 8
898 39.05 temperature 15.0 720 > th dose independent rect. 7 17
912 39.06 humidity 90.0 720 < th dose independent rect. 14 1
913 39.06 temperature 25.0 10 > th dose independent rect. 4 3
929 39.07 temperature 15.0 720 > th dose independent rect. 12 12
930 39.07 temperature 15.0 10 > th dose independent rect. 12 14
942 39.07 temperature 20.0 720 < th dose dependent rect. 12 20
949 39.08 temperature 15.0 1440 > th dose independent rect. 4 8
953 39.08 temperature 15.0 270 > th dose independent rect. 20 13
956 39.08 atmosphere 1010.0 10 < th dose independent rect. 16 23
957 39.08 temperature 10.0 720 > th dose dependent rect. 14 1
969 39.09 temperature 25.0 720 > th dose independent rect. 3 6
987 39.09 temperature 20.0 720 < th dose dependent rect. 8 8