Os08g0227200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os08g0227200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.11 | 0.194 | 9.76 | 0.478 | 0.695 | -0.338 | -0.0474 | -0.0467 | 0.00768 | 16.4 | 1009 | 5470 | -- | -- |
| 17.11 | 0.193 | 9.76 | 0.485 | 0.695 | -0.333 | -0.0474 | -- | 0.00255 | 16.4 | 1009 | 5447 | -- | -- |
| 17.12 | 0.193 | 9.76 | 0.478 | 0.695 | -0.338 | -- | -0.0429 | 0.00755 | 16.4 | 1009 | 5468 | -- | -- |
| 17.12 | 0.193 | 9.76 | 0.485 | 0.695 | -0.333 | -- | -- | 0.00247 | 16.4 | 1009 | 5456 | -- | -- |
| 42.72 | 0.304 | 9.76 | 0.466 | -- | -0.4 | -- | -0.0549 | -0.0309 | -- | 1009 | 5293 | -- | -- |
| 20.68 | 0.213 | 9.76 | 0.377 | 0.714 | -- | -0.0443 | -- | 0.00274 | 16.4 | -- | -- | -- | -- |
| 20.68 | 0.213 | 9.76 | 0.377 | 0.714 | -- | -- | -- | 0.0025 | 16.4 | -- | -- | -- | -- |
| 42.73 | 0.304 | 9.76 | 0.477 | -- | -0.398 | -- | -- | -0.0298 | -- | 1009 | 5285 | -- | -- |
| 22.71 | 0.222 | 9.77 | -- | 0.7 | -0.215 | -- | -- | -0.0191 | 16.5 | 1008 | 10788 | -- | -- |
| 48.01 | 0.324 | 9.76 | 0.349 | -- | -- | -- | -- | -0.0164 | -- | -- | -- | -- | -- |
| 24.42 | 0.231 | 9.77 | -- | 0.707 | -- | -- | -- | -0.0394 | 16.4 | -- | -- | -- | -- |
| 46.79 | 0.319 | 9.78 | -- | -- | -0.354 | -- | -- | -0.161 | -- | 1009 | 2588 | -- | -- |
| 51.21 | 0.334 | 9.77 | -- | -- | -- | -- | -- | -0.055 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 4 | 16.86 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 9 | 16.92 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 11 | 16.94 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 13 | 16.94 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 16 | 16.95 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 17 | 16.95 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 26 | 16.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 33 | 16.99 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 41 | 17.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 50 | 17.01 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 58 | 17.02 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 71 | 17.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 76 | 17.03 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 79 | 17.03 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 83 | 17.04 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 86 | 17.04 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 111 | 17.05 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 113 | 17.05 | radiation | 20 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 133 | 17.06 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 134 | 17.06 | temperature | 15 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 135 | 17.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 136 | 17.06 | radiation | 20 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 148 | 17.06 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 149 | 17.07 | temperature | 20 | 43200 | > th | dose independent | sin | 19 | NA |
| 150 | 17.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 151 | 17.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 159 | 17.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 171 | 17.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 179 | 17.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 195 | 17.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 205 | 17.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 228 | 17.08 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 229 | 17.08 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 234 | 17.08 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 249 | 17.08 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 320 | 17.09 | temperature | 20 | 43200 | < th | dose independent | sin | 18 | NA |
| 323 | 17.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 328 | 17.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 344 | 17.09 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 355 | 17.09 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 377 | 17.09 | temperature | 25 | 43200 | < th | dose dependent | sin | 1 | NA |
| 383 | 17.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 493 | 17.10 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 495 | 17.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 496 | 17.10 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 499 | 17.10 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 501 | 17.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 503 | 17.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 516 | 17.10 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 519 | 17.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 569 | 17.10 | temperature | 15 | 43200 | > th | dose dependent | sin | 3 | NA |
| 571 | 17.10 | temperature | 25 | 43200 | < th | dose dependent | sin | 23 | NA |
| 612 | 17.10 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 759 | 17.11 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 765 | 17.11 | radiation | 20 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 848 | 17.11 | temperature | 15 | 43200 | > th | dose dependent | sin | 0 | NA |
| 858 | 17.11 | temperature | 25 | 43200 | < th | dose dependent | sin | 7 | NA |
| 869 | 17.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 874 | 17.11 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |