Os08g0227100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os08g0227100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.71 | 0.252 | 9.04 | 0.834 | 0.4 | -0.928 | 0.269 | -0.0742 | 0.169 | 21.3 | 77 | 1365 | -- | -- |
| 28.71 | 0.25 | 9.04 | 0.842 | 0.404 | -0.935 | 0.265 | -- | 0.171 | 21.3 | 76.73 | 1355 | -- | -- |
| 28.95 | 0.251 | 9.04 | 0.827 | 0.403 | -0.931 | -- | -0.0784 | 0.168 | 21.4 | 77 | 1355 | -- | -- |
| 28.96 | 0.251 | 9.04 | 0.832 | 0.406 | -0.937 | -- | -- | 0.171 | 21.5 | 76.83 | 1346 | -- | -- |
| 37.63 | 0.286 | 9.03 | 0.834 | -- | -0.933 | -- | 0.0395 | 0.168 | -- | 76.07 | 1425 | -- | -- |
| 41.73 | 0.303 | 9.06 | 0.763 | 0.406 | -- | 0.279 | -- | 0.109 | 20.6 | -- | -- | -- | -- |
| 41.97 | 0.303 | 9.06 | 0.754 | 0.404 | -- | -- | -- | 0.109 | 20.7 | -- | -- | -- | -- |
| 37.63 | 0.286 | 9.03 | 0.83 | -- | -0.931 | -- | -- | 0.167 | -- | 76.59 | 1425 | -- | -- |
| 46.29 | 0.317 | 9.07 | -- | 0.393 | -0.932 | -- | -- | 0.0717 | 21.4 | 79 | 1371 | -- | -- |
| 51.23 | 0.334 | 9.05 | 0.753 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 56.93 | 0.353 | 9.08 | -- | 0.403 | -- | -- | -- | 0.0246 | 20.9 | -- | -- | -- | -- |
| 53.2 | 0.34 | 9.05 | -- | -- | -0.98 | -- | -- | 0.0864 | -- | 83.83 | 1466 | -- | -- |
| 66.18 | 0.38 | 9.07 | -- | -- | -- | -- | -- | 0.0217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.94 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 2 | 28.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 3 | 28.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 19 | 29.17 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 23 | 29.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 24 | 29.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 26 | 29.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 44 | 29.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 45 | 29.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 76 | 29.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 78 | 29.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 112 | 29.50 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 124 | 29.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 269 | 29.97 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 284 | 29.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 311 | 30.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 332 | 30.04 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 349 | 30.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 357 | 30.07 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 360 | 30.07 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 19 |
| 369 | 30.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 374 | 30.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 430 | 30.13 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 431 | 30.14 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 528 | 30.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 534 | 30.24 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 565 | 30.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 616 | 30.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 617 | 30.33 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 644 | 30.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 645 | 30.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 674 | 30.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 722 | 30.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 790 | 30.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 801 | 30.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 824 | 30.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 826 | 30.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 888 | 30.62 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 897 | 30.63 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 916 | 30.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 919 | 30.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 927 | 30.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 928 | 30.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 936 | 30.66 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 968 | 30.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 19 |