Os08g0226800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os08g0226800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 542.31 | 1.09 | 3.43 | -0.188 | 0.404 | -1.76 | 1.11 | 5.7 | -0.756 | 10.4 | 50 | 4344 | -- | -- |
| 561.59 | 1.11 | 3.55 | -0.616 | 0.436 | 0.396 | 0.991 | -- | -0.651 | 10.5 | 51 | 2271 | -- | -- |
| 547.18 | 1.09 | 3.43 | -0.142 | 0.397 | -1.74 | -- | 5.57 | -0.751 | 10.7 | 49.89 | 4361 | -- | -- |
| 558.76 | 1.1 | 3.57 | -0.656 | 0.356 | 0.561 | -- | -- | -0.701 | 10.6 | 45 | 12541 | -- | -- |
| 556.77 | 1.1 | 3.43 | -0.109 | -- | -1.9 | -- | 5.89 | -0.768 | -- | 50 | 4375 | -- | -- |
| 563.53 | 1.11 | 3.56 | -0.613 | 0.463 | -- | 0.955 | -- | -0.667 | 10.8 | -- | -- | -- | -- |
| 567.28 | 1.12 | 3.56 | -0.573 | 0.458 | -- | -- | -- | -0.663 | 11.1 | -- | -- | -- | -- |
| 564.96 | 1.11 | 3.55 | -0.535 | -- | 0.764 | -- | -- | -0.58 | -- | 41.15 | 14367 | -- | -- |
| 554.33 | 1.1 | 3.51 | -- | 0.423 | 0.86 | -- | -- | -0.477 | 10.8 | 45.04 | 14394 | -- | -- |
| 580.36 | 1.13 | 3.57 | -0.584 | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
| 575.93 | 1.12 | 3.54 | -- | 0.463 | -- | -- | -- | -0.599 | 11.2 | -- | -- | -- | -- |
| 566.91 | 1.11 | 3.52 | -- | -- | 0.887 | -- | -- | -0.472 | -- | 45.41 | 14380 | -- | -- |
| 589.35 | 1.13 | 3.55 | -- | -- | -- | -- | -- | -0.602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 530.49 | humidity | 80 | 10 | < th | dose dependent | rect. | 20 | 3 |
| 5 | 531.02 | humidity | 80 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 11 | 531.42 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 12 | 531.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 16 | 532.61 | humidity | 80 | 30 | < th | dose independent | rect. | 20 | 2 |
| 20 | 532.70 | temperature | 20 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 33 | 533.89 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 34 | 534.04 | wind | 5 | 10 | > th | dose dependent | rect. | 20 | 3 |
| 48 | 535.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 54 | 535.78 | wind | 5 | 10 | > th | dose independent | rect. | 20 | 2 |
| 61 | 536.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 63 | 536.28 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 64 | 536.30 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 65 | 536.31 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 66 | 536.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 73 | 536.56 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 89 | 536.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 102 | 536.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 110 | 537.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 113 | 537.10 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 116 | 537.10 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 131 | 537.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 151 | 537.44 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 153 | 537.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 179 | 537.59 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 211 | 537.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 218 | 537.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 219 | 537.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 263 | 537.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 292 | 538.11 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 293 | 538.11 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 7 |
| 302 | 538.16 | atmosphere | 1000 | 43200 | < th | dose dependent | sin | 11 | NA |
| 307 | 538.18 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 310 | 538.18 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 348 | 538.25 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 349 | 538.25 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 376 | 538.30 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 480 | 538.48 | atmosphere | 995 | 43200 | > th | dose independent | sin | 15 | NA |
| 563 | 538.57 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 615 | 538.66 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 715 | 538.80 | atmosphere | 995 | 43200 | < th | dose independent | sin | 22 | NA |
| 748 | 538.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 809 | 538.89 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 810 | 538.89 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 827 | 538.91 | atmosphere | 995 | 43200 | < th | dose independent | sin | 15 | NA |
| 829 | 538.91 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 869 | 538.94 | atmosphere | 995 | 43200 | > th | dose independent | sin | 22 | NA |
| 897 | 538.97 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 932 | 538.99 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |