Os08g0226600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0226600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.48 | 0.485 | 5.07 | 1.02 | 2.27 | -1.74 | 0.0478 | -2.4 | 0.605 | 22.1 | 25 | 1695 | -- | -- |
| 111.8 | 0.492 | 5.13 | 0.593 | 2.25 | -1.41 | 0.0565 | -- | 0.511 | 22.2 | 27.45 | 1789 | -- | -- |
| 106.49 | 0.481 | 5.07 | 1.02 | 2.27 | -1.74 | -- | -2.4 | 0.605 | 22.1 | 25 | 1695 | -- | -- |
| 111.75 | 0.492 | 5.12 | 0.574 | 2.24 | -1.44 | -- | -- | 0.499 | 22.1 | 27.27 | 1789 | -- | -- |
| 307.98 | 0.817 | 5.05 | 0.625 | -- | -3.07 | -- | -1.84 | 0.456 | -- | 39.19 | 762 | -- | -- |
| 144.95 | 0.564 | 5.05 | 1.06 | 2.28 | -- | 0.0801 | -- | 0.839 | 22.1 | -- | -- | -- | -- |
| 144.97 | 0.564 | 5.05 | 1.06 | 2.28 | -- | -- | -- | 0.839 | 22.1 | -- | -- | -- | -- |
| 308.96 | 0.819 | 5.1 | 0.304 | -- | -3.07 | -- | -- | 0.326 | -- | 31.35 | 748 | -- | -- |
| 119.12 | 0.508 | 5.15 | -- | 2.13 | -1.6 | -- | -- | 0.426 | 22.1 | 26.8 | 2052 | -- | -- |
| 459.51 | 1 | 4.99 | 1.09 | -- | -- | -- | -- | 0.842 | -- | -- | -- | -- | -- |
| 174.66 | 0.618 | 5.08 | -- | 2.29 | -- | -- | -- | 0.721 | 22.1 | -- | -- | -- | -- |
| 310.67 | 0.821 | 5.12 | -- | -- | -3.11 | -- | -- | 0.282 | -- | 31.22 | 760 | -- | -- |
| 490.94 | 1.03 | 5.02 | -- | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 6 | 106.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 38 | 106.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 44 | 106.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 45 | 106.79 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 80 | 106.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 131 | 107.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 148 | 107.24 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 156 | 107.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 158 | 107.27 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 326 | 108.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 338 | 108.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 357 | 108.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 419 | 108.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 439 | 108.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 470 | 108.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 529 | 109.10 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 557 | 109.17 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 725 | 109.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 733 | 109.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 973 | 110.08 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 974 | 110.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |