FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0225400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF266, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0142) R2 : 0.00513
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0457 (0.0298) R2dN8 : 0.00663 R2N8 : 0.00513
σ : 0.267
deviance : 32.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.35 0.259 3.09 1.02 0.0656 -0.671 0.153 5.52 0.0363 10.9 28.88 1664 -- --
31.78 0.263 3.19 0.115 0.0622 -0.0726 0.149 -- -0.0397 11.1 33.93 996 -- --
30.42 0.257 3.09 1.04 0.0654 -0.664 -- 5.42 0.0415 10 28.77 1646 -- --
31.75 0.262 3.2 0.118 0.0652 -0.0729 -- -- -0.0446 8.65 33.81 991 -- --
30.7 0.258 3.09 1.04 -- -0.667 -- 5.42 0.0444 -- 28.76 1646 -- --
31.94 0.265 3.19 0.0965 0.0796 -- 0.123 -- -0.0349 9.77 -- -- -- --
31.99 0.265 3.19 0.101 0.0815 -- -- -- -0.035 9.1 -- -- -- --
32.06 0.264 3.2 0.117 -- -0.082 -- -- -0.0456 -- 33.9 987 -- --
32.08 0.264 3.2 -- 0.0776 -0.0623 -- -- -0.0566 8.62 33.71 1009 -- --
32.37 0.266 3.2 0.1 -- -- -- -- -0.0346 -- -- -- -- --
32.26 0.266 3.2 -- 0.0816 -- -- -- -0.0463 9 -- -- -- --
32.41 0.265 3.2 -- -- -0.0708 -- -- -0.0574 -- 33.52 989 -- --
32.64 0.267 3.2 -- -- -- -- -- -0.0457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.82 humidity 80.0 14400 < th dose dependent rect. 1 8
2 29.84 atmosphere 1000.0 90 > th dose independent rect. 3 23
4 29.85 atmosphere 1005.0 10 > th dose dependent rect. 2 2
12 30.03 humidity 90.0 90 < th dose independent rect. 2 2
14 30.07 humidity 90.0 720 < th dose independent rect. 2 2
16 30.09 wind 5.0 14400 < th dose dependent rect. 11 1
20 30.11 wind 5.0 14400 < th dose independent rect. 11 1
22 30.11 atmosphere 1000.0 720 > th dose independent rect. 3 8
25 30.15 humidity 80.0 90 < th dose independent rect. 24 3
26 30.15 humidity 80.0 90 < th dose dependent rect. 24 3
28 30.16 humidity 80.0 90 < th dose independent rect. 24 5
29 30.16 wind 1.0 14400 > th dose dependent rect. 11 1
31 30.16 humidity 80.0 90 < th dose dependent rect. 24 5
32 30.17 atmosphere 1000.0 30 > th dose independent rect. 21 23
57 30.22 humidity 90.0 10 < th dose dependent rect. 3 1
61 30.23 humidity 90.0 10 < th dose independent rect. 3 1
62 30.23 wind 1.0 14400 < th dose dependent rect. 6 1
67 30.25 wind 5.0 14400 > th dose independent rect. 11 1
71 30.25 wind 5.0 14400 < th dose independent rect. 10 5
88 30.30 wind 5.0 14400 > th dose independent rect. 10 5
90 30.32 humidity 70.0 14400 > th dose independent rect. 8 1
94 30.33 temperature 30.0 1440 < th dose independent rect. 14 21
99 30.35 atmosphere 1000.0 720 > th dose independent rect. 19 16
101 30.36 temperature 30.0 1440 > th dose independent rect. 14 21
109 30.37 temperature 25.0 30 > th dose dependent rect. 24 11
113 30.38 wind 1.0 14400 < th dose dependent rect. 4 4
117 30.39 wind 3.0 14400 > th dose dependent rect. 10 5
127 30.41 wind 3.0 90 < th dose independent rect. 2 1
129 30.41 humidity 70.0 14400 < th dose independent rect. 8 1
136 30.42 wind 1.0 14400 < th dose independent rect. 4 4
142 30.43 wind 7.0 14400 < th dose independent rect. 9 1
149 30.44 wind 9.0 1440 < th dose independent rect. 21 1
151 30.44 humidity 90.0 720 < th dose dependent rect. 1 3
153 30.45 wind 1.0 14400 < th dose independent rect. 5 2
158 30.45 temperature 25.0 720 > th dose dependent rect. 2 6
162 30.46 wind 1.0 14400 > th dose independent rect. 5 2
185 30.47 wind 1.0 14400 > th dose independent rect. 4 4
190 30.47 temperature 20.0 10 < th dose dependent rect. 3 1
195 30.48 temperature 15.0 1440 > th dose independent rect. 21 1
196 30.48 humidity 90.0 720 > th dose independent rect. 3 1
213 30.49 atmosphere 1000.0 720 > th dose independent rect. 23 8
219 30.49 temperature 25.0 10 > th dose dependent rect. 21 14
222 30.50 atmosphere 1005.0 90 > th dose independent rect. 2 1
231 30.50 wind 1.0 14400 < th dose dependent rect. 2 6
245 30.52 humidity 70.0 14400 < th dose independent rect. 7 3
278 30.53 atmosphere 1000.0 720 > th dose independent rect. 21 14
281 30.53 wind 5.0 90 < th dose dependent rect. 2 1
294 30.54 precipitation 0.1 720 < th dose independent rect. 15 8
298 30.54 radiation 30.0 14400 < th dose dependent rect. 21 1
310 30.54 temperature 25.0 10 > th dose dependent rect. 4 7
312 30.54 precipitation 0.1 720 < th dose dependent rect. 15 8
317 30.55 temperature 30.0 1440 < th dose independent rect. 21 1
321 30.55 humidity 50.0 1440 > th dose independent rect. 21 1
327 30.55 atmosphere 995.0 1440 > th dose independent rect. 21 1
328 30.55 radiation 1.0 1440 < th dose independent rect. 21 1
348 30.55 temperature 30.0 1440 < th dose independent rect. 14 8
350 30.55 temperature 30.0 1440 < th dose independent rect. 14 15
352 30.55 atmosphere 995.0 720 > th dose independent rect. 23 16
355 30.55 radiation 20.0 10 > th dose independent rect. 16 18
356 30.55 temperature 10.0 1440 > th dose independent rect. 22 23
359 30.55 temperature 25.0 4320 > th dose dependent rect. 6 1
364 30.55 temperature 25.0 10 > th dose dependent rect. 6 5
372 30.56 temperature 30.0 1440 < th dose independent rect. 14 6
382 30.56 atmosphere 1000.0 720 < th dose dependent rect. 6 1
391 30.57 wind 3.0 30 > th dose independent rect. 20 1
392 30.57 temperature 25.0 720 > th dose independent rect. 6 1
398 30.57 temperature 30.0 1440 < th dose independent rect. 14 4
406 30.57 temperature 30.0 1440 > th dose dependent rect. 15 1
407 30.57 atmosphere 1005.0 30 > th dose dependent rect. 20 1
413 30.57 atmosphere 1010.0 30 < th dose dependent rect. 7 3
414 30.58 temperature 20.0 90 < th dose independent rect. 2 1
415 30.58 humidity 80.0 30 > th dose independent rect. 20 1
418 30.58 radiation 20.0 10 > th dose independent rect. 7 3
422 30.58 temperature 30.0 1440 > th dose independent rect. 14 5
450 30.58 temperature 30.0 1440 < th dose independent rect. 3 14
459 30.58 atmosphere 1000.0 90 < th dose independent rect. 6 20
468 30.59 temperature 30.0 1440 < th dose independent sin 12 NA
469 30.59 temperature 25.0 30 > th dose independent rect. 20 1
480 30.59 temperature 30.0 1440 < th dose independent rect. 21 20
481 30.59 temperature 30.0 1440 < th dose independent rect. 19 21
487 30.59 precipitation 0.1 90 < th dose independent rect. 3 23
502 30.59 precipitation 0.1 90 < th dose dependent rect. 3 23
505 30.60 atmosphere 1005.0 30 > th dose independent rect. 20 1
508 30.60 temperature 30.0 1440 < th dose independent rect. 8 8
523 30.60 temperature 30.0 1440 < th dose independent rect. 3 19
537 30.61 temperature 30.0 1440 < th dose independent no NA NA
548 30.61 temperature 25.0 30 > th dose independent rect. 24 11
550 30.61 temperature 30.0 1440 < th dose independent rect. 8 14
575 30.61 temperature 30.0 1440 < th dose independent rect. 8 21
598 30.61 wind 1.0 30 > th dose dependent rect. 20 1
599 30.61 temperature 20.0 30 > th dose dependent rect. 20 1
600 30.61 humidity 70.0 30 > th dose dependent rect. 20 1
609 30.62 atmosphere 1000.0 1440 > th dose independent rect. 1 1
642 30.62 atmosphere 1000.0 90 < th dose independent rect. 24 17
670 30.62 atmosphere 1000.0 10 > th dose independent rect. 11 23
681 30.63 temperature 30.0 1440 < th dose independent sin 22 NA
685 30.63 wind 5.0 30 < th dose independent rect. 20 1
689 30.63 humidity 90.0 30 < th dose independent rect. 20 1
691 30.63 temperature 30.0 1440 > th dose independent rect. 15 2
695 30.63 temperature 30.0 4320 < th dose independent rect. 3 6
698 30.63 atmosphere 995.0 10 > th dose independent rect. 10 10
710 30.63 atmosphere 1000.0 270 < th dose independent rect. 21 19
717 30.63 temperature 15.0 30 > th dose independent rect. 21 23
726 30.64 temperature 30.0 1440 < th dose independent sin 18 NA
734 30.64 temperature 10.0 30 > th dose independent rect. 20 1
736 30.64 temperature 30.0 30 < th dose independent rect. 20 1
737 30.64 humidity 50.0 30 > th dose independent rect. 20 1
740 30.64 atmosphere 995.0 30 > th dose independent rect. 20 1
742 30.64 atmosphere 1000.0 720 < th dose independent rect. 6 1
744 30.64 atmosphere 1010.0 30 < th dose independent rect. 20 1
746 30.64 radiation 10.0 30 > th dose independent rect. 7 1
747 30.64 radiation 1.0 30 < th dose independent rect. 20 1
752 30.64 precipitation 0.1 30 < th dose independent rect. 20 1
788 30.64 atmosphere 1010.0 10 < th dose dependent rect. 2 1
789 30.64 radiation 1.0 43200 < th dose dependent rect. 3 1
790 30.64 radiation 1.0 30 < th dose dependent rect. 20 1
795 30.64 precipitation 0.1 30 < th dose dependent rect. 20 1
803 30.64 humidity 50.0 4320 > th dose dependent rect. 23 13
806 30.65 temperature 30.0 1440 > th dose independent sin 12 NA
819 30.65 atmosphere 1000.0 30 > th dose independent rect. 23 21
824 30.65 radiation 1.0 10 > th dose dependent rect. 7 3
828 30.65 wind 1.0 14400 < th dose dependent rect. 4 7
834 30.66 atmosphere 1000.0 1440 > th dose independent rect. 22 4
836 30.66 wind 1.0 14400 < th dose independent rect. 2 6
843 30.66 temperature 25.0 10 < th dose independent rect. 2 12
845 30.66 atmosphere 1000.0 10 > th dose independent rect. 2 14
856 30.66 wind 9.0 30 < th dose dependent rect. 20 1
857 30.66 temperature 20.0 720 > th dose dependent rect. 3 1
873 30.67 temperature 25.0 720 > th dose independent rect. 3 5
874 30.67 temperature 30.0 1440 < th dose independent rect. 12 6
892 30.67 atmosphere 1000.0 720 < th dose independent rect. 21 13
920 30.68 temperature 10.0 90 > th dose independent rect. 2 1
922 30.68 temperature 30.0 90 < th dose independent rect. 2 1
923 30.68 humidity 50.0 90 > th dose independent rect. 2 1
926 30.68 atmosphere 995.0 90 > th dose independent rect. 2 1
928 30.68 atmosphere 1010.0 90 < th dose independent rect. 2 1
930 30.68 radiation 1.0 90 < th dose independent rect. 2 1
935 30.68 precipitation 0.1 90 < th dose independent rect. 2 1
942 30.68 atmosphere 1000.0 720 > th dose independent rect. 23 10
962 30.68 temperature 10.0 90 > th dose independent rect. 3 23
964 30.68 humidity 50.0 4320 > th dose dependent sin 6 NA
968 30.68 radiation 1.0 90 < th dose dependent rect. 2 1
973 30.68 precipitation 0.1 90 < th dose dependent rect. 2 1
994 30.69 atmosphere 995.0 1440 > th dose independent rect. 3 12