Os08g0224500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0224500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 3-glucanase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.18	(0.0393)	R²	:	0.668
β₁	:	-2.97	(0.144)	R²_dD	:	0.324	R²_D	:	0.301
β₂	:	1.53	(0.137)	R²_dC	:	0.173	R²_C	:	0.28
β₃	:	-1.09	(0.187)	R²_dE	:	0.0465	R²_E	:	0.18
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.531	(0.0836)	R²_dN8	:	0.0393	R²_N8	:	-0.0144
σ	:	0.732
deviance	:	247.04
__

_____

C
peak time of C	:	7.97
E
wheather	:	humidity
threshold	:	87
memory length	:	680
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
241.85	0.731	6.19	-3.09	1.55	-1.02	-1.61	-2.1	-0.53	7.85	92	702	--	--
245.37	0.73	6.18	-2.97	1.52	-1.12	-0.869	--	-0.519	7.9	86.97	681	--	--
246.54	0.731	6.18	-3.06	1.57	-0.989	--	-0.716	-0.542	7.92	88	680	--	--
247.04	0.732	6.18	-2.97	1.53	-1.09	--	--	-0.531	7.97	87	680	--	--
311.74	0.822	6.21	-3.02	--	-2.43	--	-0.407	-0.501	--	91.99	623	--	--
264.52	0.762	6.16	-3.05	2.08	--	-0.498	--	-0.516	7.88	--	--	--	--
265.24	0.763	6.16	-3.06	2.08	--	--	--	-0.515	7.89	--	--	--	--
309.74	0.82	6.2	-2.95	--	-2.7	--	--	-0.447	--	95	641	--	--
463.19	1	6.13	--	1.84	-1.58	--	--	-0.334	7.46	73.14	1030	--	--
499.71	1.04	6.21	-3.04	--	--	--	--	-0.487	--	--	--	--	--
512.29	1.06	6.08	--	2.06	--	--	--	-0.174	7.99	--	--	--	--
524.33	1.07	6.17	--	--	-2.71	--	--	-0.28	--	81.91	700	--	--
743.26	1.27	6.14	--	--	--	--	--	-0.15	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	230.73	humidity	80.0	1440	< th	dose independent	rect.	8	2
4	233.63	humidity	80.0	1440	> th	dose independent	rect.	8	1
5	233.97	radiation	1.0	720	< th	dose independent	rect.	17	6
6	234.35	radiation	1.0	720	> th	dose independent	sin	13	NA
12	235.93	radiation	10.0	720	< th	dose dependent	rect.	16	7
13	236.10	humidity	50.0	720	> th	dose dependent	rect.	3	19
15	236.33	radiation	20.0	720	> th	dose independent	rect.	15	2
30	236.36	radiation	1.0	720	> th	dose independent	rect.	16	14
38	237.09	radiation	1.0	720	> th	dose independent	rect.	16	19
44	237.66	humidity	60.0	270	> th	dose dependent	rect.	17	5
45	237.74	humidity	90.0	14400	< th	dose independent	rect.	18	1
46	237.83	radiation	1.0	720	< th	dose independent	rect.	3	16
76	238.43	humidity	70.0	1440	< th	dose independent	rect.	10	1
77	238.45	radiation	1.0	720	< th	dose independent	rect.	3	20
79	238.54	temperature	30.0	720	< th	dose independent	rect.	11	12
87	238.64	temperature	30.0	720	< th	dose independent	rect.	11	4
90	238.69	humidity	90.0	720	< th	dose dependent	rect.	14	21
91	238.70	radiation	1.0	720	> th	dose independent	sin	20	NA
92	238.70	humidity	70.0	720	> th	dose independent	rect.	3	19
93	238.70	humidity	70.0	720	> th	dose independent	rect.	2	21
96	238.72	radiation	1.0	720	> th	dose dependent	rect.	16	14
98	238.76	humidity	80.0	1440	< th	dose dependent	rect.	9	1
100	238.80	humidity	90.0	14400	< th	dose independent	rect.	21	1
105	238.91	temperature	30.0	720	< th	dose independent	rect.	11	20
108	238.95	humidity	70.0	270	> th	dose independent	rect.	11	11
109	239.00	temperature	25.0	720	> th	dose dependent	rect.	15	2
111	239.05	radiation	1.0	720	< th	dose dependent	rect.	4	15
112	239.08	radiation	1.0	720	> th	dose dependent	rect.	16	2
127	239.20	humidity	80.0	720	< th	dose independent	rect.	7	12
128	239.20	temperature	25.0	720	> th	dose dependent	rect.	14	4
131	239.32	radiation	1.0	720	< th	dose independent	sin	1	NA
148	239.57	radiation	1.0	720	< th	dose dependent	sin	1	NA
149	239.59	humidity	90.0	14400	< th	dose independent	rect.	17	5
155	239.64	humidity	50.0	270	> th	dose dependent	rect.	11	11
156	239.65	wind	9.0	4320	< th	dose independent	rect.	18	20
159	239.66	temperature	25.0	14400	< th	dose dependent	rect.	17	1
211	239.81	humidity	80.0	1440	< th	dose dependent	rect.	8	3
217	239.85	humidity	90.0	14400	> th	dose dependent	rect.	21	2
220	239.87	wind	7.0	4320	< th	dose independent	rect.	13	1
224	239.88	radiation	1.0	720	> th	dose dependent	rect.	15	18
226	239.90	temperature	30.0	720	> th	dose independent	rect.	14	3
256	240.03	humidity	90.0	14400	> th	dose independent	rect.	21	2
263	240.08	humidity	70.0	720	< th	dose independent	rect.	14	21
269	240.12	temperature	30.0	720	< th	dose independent	rect.	13	2
315	240.24	wind	9.0	4320	> th	dose independent	rect.	18	20
317	240.25	wind	7.0	4320	> th	dose independent	rect.	13	1
345	240.41	wind	7.0	4320	> th	dose dependent	rect.	20	18
350	240.44	humidity	90.0	14400	> th	dose independent	rect.	18	1
360	240.50	humidity	70.0	270	> th	dose independent	rect.	17	5
365	240.51	humidity	80.0	14400	> th	dose dependent	rect.	17	2
377	240.58	wind	9.0	4320	> th	dose independent	rect.	20	18
378	240.59	humidity	90.0	14400	< th	dose independent	rect.	10	12
398	240.64	precipitation	0.1	720	< th	dose independent	rect.	15	20
400	240.64	precipitation	0.1	720	< th	dose dependent	rect.	15	20
407	240.66	humidity	90.0	720	< th	dose dependent	rect.	24	19
415	240.70	wind	7.0	4320	> th	dose dependent	rect.	4	11
419	240.71	humidity	80.0	1440	< th	dose dependent	rect.	3	8
421	240.72	precipitation	0.1	270	< th	dose independent	rect.	14	13
422	240.72	humidity	50.0	720	> th	dose dependent	rect.	11	2
424	240.72	precipitation	0.1	270	< th	dose dependent	rect.	14	13
428	240.74	wind	7.0	4320	> th	dose independent	rect.	4	11
440	240.80	humidity	80.0	720	< th	dose independent	rect.	16	3
454	240.88	wind	7.0	4320	< th	dose independent	rect.	4	11
466	240.91	temperature	25.0	720	> th	dose dependent	rect.	14	20
470	240.92	humidity	50.0	720	> th	dose dependent	rect.	17	22
473	240.94	humidity	90.0	14400	> th	dose independent	rect.	18	5
479	240.97	humidity	90.0	720	< th	dose dependent	rect.	7	12
501	241.04	humidity	70.0	1440	> th	dose independent	rect.	21	14
502	241.04	humidity	80.0	720	> th	dose independent	rect.	3	16
520	241.10	radiation	40.0	720	< th	dose independent	rect.	11	4
527	241.14	temperature	20.0	14400	< th	dose independent	rect.	21	2
551	241.21	radiation	10.0	720	< th	dose dependent	rect.	3	20
561	241.24	temperature	20.0	14400	> th	dose independent	rect.	19	5
579	241.26	humidity	70.0	270	> th	dose independent	rect.	15	7
581	241.26	temperature	30.0	720	< th	dose independent	rect.	2	21
586	241.28	radiation	1.0	720	< th	dose independent	sin	13	NA
603	241.34	humidity	80.0	4320	> th	dose dependent	rect.	8	3
613	241.35	humidity	90.0	14400	> th	dose dependent	rect.	18	6
646	241.39	temperature	20.0	14400	< th	dose independent	rect.	19	5
661	241.42	temperature	25.0	720	> th	dose dependent	rect.	13	13
681	241.45	radiation	40.0	720	< th	dose dependent	sin	12	NA
706	241.50	temperature	15.0	270	> th	dose dependent	rect.	13	14
717	241.53	temperature	20.0	14400	> th	dose independent	rect.	21	2
730	241.56	precipitation	0.1	270	< th	dose independent	rect.	21	23
735	241.56	precipitation	0.1	270	< th	dose dependent	rect.	21	23
739	241.57	radiation	20.0	720	< th	dose dependent	rect.	16	15
743	241.58	wind	7.0	4320	> th	dose dependent	sin	4	NA
773	241.63	temperature	30.0	720	> th	dose independent	rect.	14	19
807	241.70	humidity	90.0	720	< th	dose dependent	rect.	7	19
826	241.74	wind	7.0	270	< th	dose independent	rect.	22	20
917	241.82	humidity	90.0	14400	> th	dose dependent	rect.	12	12
931	241.85	humidity	90.0	14400	> th	dose independent	rect.	10	13
945	241.87	wind	9.0	43200	< th	dose independent	rect.	12	2
947	241.87	precipitation	0.1	720	< th	dose independent	rect.	23	20
948	241.87	radiation	1.0	720	> th	dose dependent	sin	13	NA
950	241.87	precipitation	0.1	720	< th	dose dependent	rect.	23	20
951	241.88	temperature	20.0	14400	> th	dose independent	rect.	19	1
970	241.89	humidity	90.0	14400	> th	dose dependent	rect.	10	14