Os08g0224100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/thronine protein kinase-like protein.
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Os08g0224100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/thronine protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.36 | 0.165 | 12.5 | 1.04 | 0.273 | -0.359 | 0.256 | 0.39 | 0.304 | 5.45 | 22.4 | 1542 | -- | -- |
| 12.95 | 0.168 | 12.5 | 0.955 | 0.287 | -0.373 | 0.281 | -- | 0.292 | 5.41 | 22.2 | 1911 | -- | -- |
| 12.5 | 0.165 | 12.5 | 1.05 | 0.276 | -0.36 | -- | 0.397 | 0.304 | 5.24 | 22.4 | 1498 | -- | -- |
| 12.82 | 0.167 | 12.5 | 0.931 | 0.267 | -0.365 | -- | -- | 0.282 | 4.96 | 22.4 | 2175 | -- | -- |
| 16.19 | 0.187 | 12.5 | 1.09 | -- | -0.36 | -- | 0.427 | 0.317 | -- | 22.3 | 1854 | -- | -- |
| 17.69 | 0.197 | 12.5 | 0.785 | 0.264 | -- | 0.27 | -- | 0.148 | 5.53 | -- | -- | -- | -- |
| 17.86 | 0.198 | 12.5 | 0.785 | 0.266 | -- | -- | -- | 0.147 | 5.36 | -- | -- | -- | -- |
| 16.19 | 0.187 | 12.5 | 0.947 | -- | -0.321 | -- | -- | 0.283 | -- | 22.8 | 519 | -- | -- |
| 33.3 | 0.269 | 12.5 | -- | 0.281 | -0.151 | -- | -- | 0.115 | 4.98 | 22.9 | 1965 | -- | -- |
| 21.54 | 0.217 | 12.5 | 0.795 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 34.12 | 0.273 | 12.5 | -- | 0.279 | -- | -- | -- | 0.0597 | 5.25 | -- | -- | -- | -- |
| 34.47 | 0.273 | 12.5 | -- | -- | -0.239 | -- | -- | 0.105 | -- | 27 | 331 | -- | -- |
| 38.19 | 0.288 | 12.5 | -- | -- | -- | -- | -- | 0.0656 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 10 | 12.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 168 | 12.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 229 | 12.43 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 230 | 12.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 269 | 12.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 298 | 12.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 433 | 12.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 445 | 12.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 489 | 12.58 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 629 | 12.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 692 | 12.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 696 | 12.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 701 | 12.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 807 | 12.71 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 847 | 12.72 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |