Os08g0224000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0224000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.2 | 0.316 | 7.9 | 0.887 | 0.703 | 0.421 | -0.0467 | -1.33 | 0.0638 | 17.2 | 91.24 | 704 | -- | -- |
| 49.15 | 0.327 | 7.9 | 0.75 | 0.726 | 0.459 | 0.45 | -- | 0.0513 | 17.5 | 91.65 | 704 | -- | -- |
| 45.21 | 0.313 | 7.9 | 0.886 | 0.704 | 0.423 | -- | -1.32 | 0.0636 | 17.2 | 91.25 | 704 | -- | -- |
| 49.56 | 0.328 | 7.89 | 0.756 | 0.719 | 0.413 | -- | -- | 0.0469 | 17.2 | 91.73 | 704 | -- | -- |
| 65.75 | 0.378 | 7.89 | 0.802 | -- | 0.609 | -- | -1.04 | 0.0578 | -- | 86 | 1198 | -- | -- |
| 52.73 | 0.34 | 7.91 | 0.805 | 0.63 | -- | 0.0339 | -- | -0.0206 | 16.4 | -- | -- | -- | -- |
| 52.73 | 0.34 | 7.91 | 0.805 | 0.631 | -- | -- | -- | -0.0204 | 16.4 | -- | -- | -- | -- |
| 67.77 | 0.383 | 7.9 | 0.74 | -- | 0.579 | -- | -- | 0.0354 | -- | 86 | 1223 | -- | -- |
| 64.22 | 0.373 | 7.91 | -- | 0.727 | 0.526 | -- | -- | -0.0125 | 17.5 | 90.46 | 735 | -- | -- |
| 74.04 | 0.402 | 7.9 | 0.78 | -- | -- | -- | -- | -0.0371 | -- | -- | -- | -- | -- |
| 69.82 | 0.391 | 7.93 | -- | 0.615 | -- | -- | -- | -0.11 | 16.5 | -- | -- | -- | -- |
| 81.47 | 0.42 | 7.9 | -- | -- | 0.698 | -- | -- | -0.038 | -- | 86.98 | 1238 | -- | -- |
| 90.1 | 0.443 | 7.92 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.40 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 44.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 3 | 44.73 | humidity | 90.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 4 | 44.75 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 10 | 44.84 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 12 | 44.85 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 2 |
| 13 | 44.85 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 30 | 45.02 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 19 |
| 36 | 45.03 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 38 | 45.04 | wind | 7.0 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 42 | 45.07 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 51 | 45.13 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 57 | 45.19 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 59 | 45.20 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 72 | 45.22 | wind | 7.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 91 | 45.27 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 6 |
| 93 | 45.28 | humidity | 90.0 | 720 | > th | dose independent | rect. | 14 | 22 |
| 96 | 45.28 | temperature | 25.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 113 | 45.33 | humidity | 90.0 | 720 | > th | dose independent | no | NA | NA |
| 120 | 45.33 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 151 | 45.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 156 | 45.49 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 7 |
| 166 | 45.52 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 167 | 45.52 | wind | 7.0 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 177 | 45.54 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 195 | 45.59 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 218 | 45.62 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 230 | 45.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 233 | 45.64 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 247 | 45.65 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 253 | 45.65 | temperature | 30.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 266 | 45.67 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 273 | 45.67 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 349 | 45.74 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 355 | 45.75 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 368 | 45.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 377 | 45.77 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 383 | 45.78 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 20 |
| 388 | 45.78 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 390 | 45.79 | humidity | 80.0 | 720 | > th | dose dependent | no | NA | NA |
| 403 | 45.80 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 405 | 45.81 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 421 | 45.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 442 | 45.84 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 448 | 45.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 465 | 45.88 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 500 | 45.92 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 22 | NA |
| 516 | 45.94 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 522 | 45.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 527 | 45.94 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 530 | 45.95 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 549 | 45.97 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 550 | 45.97 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 560 | 45.98 | temperature | 15.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 571 | 45.99 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 632 | 46.04 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 684 | 46.07 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 17 |
| 722 | 46.10 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 7 |
| 731 | 46.10 | temperature | 15.0 | 720 | > th | dose independent | rect. | 23 | 15 |
| 746 | 46.11 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 763 | 46.12 | humidity | 90.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 796 | 46.14 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 833 | 46.17 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 845 | 46.18 | humidity | 90.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 861 | 46.19 | humidity | 90.0 | 720 | > th | dose independent | sin | 12 | NA |
| 863 | 46.19 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 23 |
| 874 | 46.20 | humidity | 90.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 876 | 46.20 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 885 | 46.20 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 890 | 46.21 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 895 | 46.21 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 908 | 46.22 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 913 | 46.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 918 | 46.23 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 933 | 46.24 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 3 |