FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0220400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.0878) R2 : 0.157
β1 : -4.16 (0.503) R2dD : 3.22 R2D : -4.97
β2 : -- (--) R2dC : -- R2C : --
β3 : 243 (27.9) R2dE : 458 R2E : -454
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1410 (163) R2dD*E : 454 R2D*E : -458
γ1 : 0.00693 (0.0594) R2dN8 : 7.09e-05 R2N8 : -1.61
σ : 0.523
deviance : 124.92
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.63 0.518 3.78 -4.08 0.251 237 -0.121 -1380 1.41e-05 5.52 1000 10 1 1
141.36 0.558 3.08 0.0848 0.265 1.49 -0.0966 -- -0.00615 5.33 1000 10 1 1
121.66 0.518 3.79 -4.12 0.251 240 -- -1390 0.000626 5.66 1000 10 1 1
138.05 0.547 3.08 0.0759 0.253 1.98 -- -- -0.00168 5.61 1003 3 0.866 1.37
124.92 0.523 3.8 -4.16 -- 243 -- -1410 0.00693 -- 1000 11 1 1
143.88 0.562 3.08 0.0954 0.277 -- -0.0677 -- -0.0109 5.19 -- -- -- --
143.89 0.562 3.08 0.0955 0.276 -- -- -- -0.0106 5.23 -- -- -- --
141.33 0.554 3.08 0.0878 -- 2.08 -- -- 0.00708 -- 1004 5 0.884 1.42
138.12 0.547 3.08 -- 0.256 2.02 -- -- -0.00678 5.6 1003 8 0.591 1.29
147.88 0.568 3.08 0.105 -- -- -- -- -0.00367 -- -- -- -- --
144.13 0.562 3.08 -- 0.278 -- -- -- -0.0212 5.22 -- -- -- --
141.46 0.554 3.08 -- -- 2.11 -- -- -0.00176 -- 1004 8 0.567 1.33
148.17 0.568 3.08 -- -- -- -- -- -0.0153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.63 atmosphere 1000.0 10 < th dose independent rect. 1 1
8 121.63 atmosphere 1000.0 10 < th dose dependent rect. 1 1
32 131.08 atmosphere 1010.0 10 < th dose dependent rect. 2 1
48 133.12 humidity 90.0 10 > th dose dependent rect. 7 1
50 133.15 atmosphere 1000.0 30 > th dose independent rect. 3 23
53 133.25 humidity 90.0 10 > th dose dependent rect. 7 5
68 133.69 humidity 90.0 10 > th dose independent rect. 2 1
70 133.74 temperature 20.0 10 > th dose dependent rect. 2 1
71 133.76 temperature 20.0 10 > th dose independent rect. 2 1
72 133.81 humidity 80.0 10 > th dose dependent rect. 2 1
73 133.82 wind 3.0 10 < th dose independent rect. 2 1
75 133.86 temperature 25.0 10 < th dose independent rect. 2 1
83 133.93 wind 1.0 30 > th dose independent rect. 2 1
84 133.93 wind 5.0 10 < th dose dependent rect. 2 1
92 133.95 temperature 15.0 10 > th dose independent rect. 3 23
97 134.02 temperature 10.0 10 > th dose independent rect. 2 1
100 134.02 humidity 50.0 10 > th dose independent rect. 2 1
103 134.02 atmosphere 995.0 10 > th dose independent rect. 2 1
104 134.02 atmosphere 1010.0 10 < th dose independent rect. 2 1
106 134.02 radiation 1.0 10 < th dose independent rect. 2 1
111 134.02 precipitation 0.1 10 < th dose independent rect. 2 1
113 134.02 radiation 1.0 10 < th dose dependent rect. 2 1
118 134.02 precipitation 0.1 10 < th dose dependent rect. 2 1
119 134.08 wind 9.0 10 < th dose independent rect. 3 23
143 134.15 temperature 25.0 90 > th dose dependent rect. 1 3
179 134.26 temperature 30.0 30 < th dose dependent rect. 2 1
181 134.36 atmosphere 1005.0 30 > th dose dependent rect. 2 1
182 134.38 atmosphere 995.0 30 > th dose dependent rect. 2 1
190 134.42 temperature 25.0 90 > th dose independent rect. 1 3
193 134.44 radiation 1.0 14400 < th dose dependent rect. 3 1
194 134.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
196 134.49 wind 9.0 1440 < th dose independent rect. 3 1
197 134.49 temperature 10.0 1440 > th dose independent rect. 3 1
200 134.49 temperature 30.0 1440 < th dose independent rect. 3 1
204 134.49 humidity 50.0 1440 > th dose independent rect. 3 1
213 134.49 atmosphere 995.0 1440 > th dose independent rect. 3 1
214 134.49 radiation 1.0 1440 < th dose independent rect. 3 1
234 134.49 temperature 10.0 1440 > th dose independent rect. 4 23
237 134.49 radiation 1.0 1440 < th dose dependent rect. 3 1
269 134.74 precipitation 0.1 30 < th dose independent rect. 3 23
270 134.74 precipitation 0.1 30 < th dose dependent rect. 3 23
282 134.96 humidity 90.0 10 > th dose independent rect. 7 1
309 136.14 atmosphere 1000.0 10 < th dose independent rect. 1 7
334 136.55 humidity 50.0 30 > th dose independent rect. 3 23
380 137.25 atmosphere 1005.0 10 > th dose dependent rect. 2 3
396 137.50 humidity 90.0 10 > th dose independent rect. 7 5
402 137.58 humidity 90.0 10 > th dose independent rect. 24 3
415 137.67 atmosphere 1000.0 10 < th dose dependent rect. 1 7
460 138.25 atmosphere 1015.0 1440 < th dose independent rect. 3 1
493 138.51 atmosphere 1015.0 30 < th dose independent rect. 3 23
547 138.86 temperature 30.0 30 < th dose independent rect. 3 23
585 139.03 temperature 25.0 10 < th dose independent rect. 24 3
646 139.29 humidity 90.0 10 > th dose independent rect. 7 20
662 139.36 temperature 20.0 90 < th dose independent rect. 6 1
758 139.53 temperature 20.0 90 < th dose dependent rect. 6 1
761 139.53 radiation 10.0 10 < th dose dependent rect. 3 23
778 139.58 radiation 10.0 30 < th dose independent rect. 7 1
794 139.64 atmosphere 1000.0 90 < th dose independent rect. 24 11
799 139.65 atmosphere 1005.0 10 > th dose independent rect. 2 3
812 139.68 wind 1.0 10 < th dose independent rect. 15 12
832 139.71 wind 1.0 10 < th dose independent rect. 12 15
834 139.72 wind 9.0 30 < th dose dependent rect. 3 23
839 139.74 precipitation 0.1 1440 < th dose independent rect. 1 1
844 139.74 precipitation 0.1 1440 < th dose dependent rect. 1 1
846 139.75 wind 1.0 10 > th dose independent rect. 8 23
911 139.88 humidity 90.0 90 < th dose independent rect. 2 1
920 139.88 wind 1.0 720 < th dose dependent rect. 23 2
930 139.93 radiation 10.0 10 < th dose independent rect. 3 23
931 139.93 humidity 80.0 4320 < th dose dependent rect. 1 1
932 139.93 temperature 10.0 30 > th dose dependent rect. 3 23
943 139.98 wind 1.0 10 > th dose independent sin 16 NA
949 139.98 wind 3.0 10 < th dose dependent rect. 16 11
952 139.99 atmosphere 1000.0 10 > th dose independent rect. 5 21
978 140.02 wind 3.0 10 < th dose dependent rect. 14 13
992 140.06 wind 1.0 720 < th dose independent rect. 23 2
998 140.08 radiation 10.0 10 < th dose dependent rect. 5 21