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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0216900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0346) R2 : 0.39
β1 : 1.79 (0.128) R2dD : 0.277 R2D : 0.318
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.37 (0.189) R2dE : 0.0733 R2E : 0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0828 (0.0743) R2dN8 : 0.00225 R2N8 : -0.00996
σ : 0.649
deviance : 192.62
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1002
memory length : 5
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.35 0.608 4.16 2.04 0.518 0.0957 1.19 6.39 0.055 14 1004 8 -- --
171.45 0.615 4.19 1.78 0.493 1.32 1.3 -- 0.0844 14 1002 7 -- --
172.49 0.616 4.15 2.1 0.529 0.00659 -- 7.03 0.0607 14.4 1004 7 -- --
177.61 0.625 4.19 1.82 0.506 1.32 -- -- 0.0932 14.5 1002 7 -- --
188.82 0.643 4.15 2.06 -- 0.124 -- 6.76 0.0591 -- 1004 7 -- --
192.01 0.65 4.21 1.91 0.519 -- 1.32 -- 0.0238 14 -- -- -- --
198.34 0.66 4.21 1.95 0.531 -- -- -- 0.0325 14.5 -- -- -- --
192.62 0.649 4.19 1.79 -- 1.37 -- -- 0.0828 -- 1002 5 -- --
262.49 0.759 4.23 -- 0.464 1.73 -- -- -0.0856 14.5 1002 7 -- --
214.9 0.685 4.21 1.93 -- -- -- -- 0.0192 -- -- -- -- --
298.79 0.809 4.25 -- 0.493 -- -- -- -0.185 14.5 -- -- -- --
275.16 0.775 4.23 -- -- 1.77 -- -- -0.0928 -- 1002 6 -- --
313.12 0.826 4.26 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.15 atmosphere 1000 270 > th dose independent rect. 22 23
2 168.30 temperature 30 43200 > th dose dependent rect. 8 1
16 168.32 temperature 30 43200 > th dose independent rect. 8 1
30 168.33 temperature 30 43200 < th dose independent rect. 1 8
31 168.37 temperature 30 43200 < th dose independent rect. 3 6
32 168.41 atmosphere 1005 90 < th dose dependent rect. 5 22
36 168.52 temperature 30 43200 < th dose independent rect. 8 1
39 168.58 atmosphere 1005 10 < th dose dependent rect. 4 23
45 168.63 temperature 30 43200 < th dose independent rect. 23 10
46 168.64 temperature 30 43200 < th dose independent rect. 19 14
47 168.65 temperature 30 43200 < th dose independent rect. 21 12
57 168.81 atmosphere 1005 10 < th dose dependent rect. 13 23
62 168.93 atmosphere 1005 10 < th dose dependent rect. 17 23
63 168.94 atmosphere 1005 10 < th dose dependent rect. 1 23
66 168.97 atmosphere 1005 30 < th dose dependent rect. 7 23
67 168.97 atmosphere 1005 10 < th dose dependent rect. 21 23
69 168.98 atmosphere 1005 30 < th dose dependent no NA NA
71 168.98 atmosphere 1005 90 < th dose dependent rect. 15 23
72 168.98 atmosphere 1005 30 < th dose dependent rect. 19 23
74 168.99 atmosphere 1005 30 < th dose dependent rect. 23 23
77 169.00 atmosphere 1005 30 < th dose dependent rect. 9 23
80 169.04 atmosphere 1000 270 > th dose independent rect. 24 23
84 169.05 atmosphere 1005 90 < th dose dependent rect. 11 23
90 169.23 atmosphere 1000 30 > th dose independent rect. 11 23
94 169.30 atmosphere 1000 270 > th dose independent rect. 13 23
112 169.59 atmosphere 1000 270 > th dose independent rect. 11 23
137 169.77 atmosphere 1000 30 > th dose independent rect. 13 23
142 169.78 atmosphere 1000 270 < th dose independent rect. 4 22
184 170.08 atmosphere 1000 270 < th dose independent rect. 17 23
210 170.27 atmosphere 1000 270 > th dose independent no NA NA
222 170.35 atmosphere 1000 270 < th dose independent no NA NA
239 170.43 atmosphere 1000 30 > th dose independent rect. 9 23
347 170.90 atmosphere 1000 270 < th dose independent rect. 13 23
377 171.02 atmosphere 1000 10 > th dose independent rect. 24 23
388 171.07 atmosphere 1000 1440 > th dose independent rect. 17 1
425 171.18 temperature 25 4320 > th dose independent rect. 24 1
478 171.36 atmosphere 1000 270 > th dose independent rect. 7 23
488 171.38 atmosphere 1000 10 < th dose independent rect. 13 23
505 171.42 temperature 25 4320 < th dose independent rect. 24 2
506 171.42 atmosphere 1000 10 < th dose independent rect. 5 23
517 171.46 atmosphere 1000 10 < th dose independent rect. 9 23
520 171.47 atmosphere 1000 10 < th dose independent rect. 23 23
528 171.51 atmosphere 1000 1440 < th dose independent rect. 17 1
534 171.52 atmosphere 1000 10 > th dose independent no NA NA
536 171.52 atmosphere 1000 10 < th dose independent no NA NA
537 171.52 atmosphere 1000 10 < th dose independent rect. 17 23
538 171.52 atmosphere 1000 10 < th dose independent rect. 19 23
539 171.52 atmosphere 1000 10 < th dose independent rect. 21 23
545 171.53 atmosphere 1000 10 < th dose independent rect. 7 23
552 171.54 atmosphere 1000 10 < th dose independent rect. 1 23
603 171.65 atmosphere 1000 30 < th dose independent rect. 15 23
725 171.99 atmosphere 1005 1440 < th dose dependent rect. 5 17
798 172.11 atmosphere 1000 720 > th dose independent rect. 4 23
799 172.11 atmosphere 1000 720 > th dose independent rect. 17 23
811 172.12 atmosphere 1000 720 > th dose independent rect. 7 20
849 172.19 atmosphere 1005 1440 < th dose dependent rect. 5 9
910 172.26 atmosphere 1000 1440 < th dose independent rect. 15 4
940 172.30 atmosphere 1005 1440 < th dose dependent sin 23 NA
982 172.36 atmosphere 1005 1440 < th dose dependent rect. 7 3