FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0216300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0287) R2 : 0.191
β1 : 0.0699 (0.104) R2dD : 0.00087 R2D : -0.0208
β2 : -- (--) R2dC : -- R2C : --
β3 : 9.57 (0.954) R2dE : 1.88 R2E : -1.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.4 (2.3) R2dD*E : 1.47 R2D*E : -1.69
γ1 : -0.0469 (0.0593) R2dN8 : 0.0015 R2N8 : -0.0114
σ : 0.518
deviance : 123.66
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.039
memory length : 43
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 0.797

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.63 0.518 3.66 0.062 0.146 9.6 -0.5 20.1 -0.0504 2.53 7.008 11 12 1.03
158.33 0.586 3.6 -0.0453 0.193 0.641 0.771 -- -0.025 0.909 9.952 127 12.6 2.29
122.41 0.515 3.66 0.0679 0.151 9.61 -- 20.4 -0.05 3.55 7.027 43 12 0.741
151 0.572 3.59 -0.151 0.117 -0.439 -- -- -0.073 4.57 8.909 149 15.1 3.2
123.66 0.518 3.66 0.0699 -- 9.57 -- 20.4 -0.0469 -- 7.039 43 12 0.797
150.86 0.576 3.6 -0.141 0.123 -- -0.374 -- -0.0701 3.31 -- -- -- --
151.22 0.576 3.59 -0.134 0.13 -- -- -- -0.0682 4.44 -- -- -- --
150.06 0.573 3.59 -0.158 -- -0.416 -- -- -0.0457 -- 3.69 134 14.8 8.69
151.35 0.576 3.59 -- 0.119 -0.434 -- -- -0.0558 4.33 8.268 119 16.8 2.62
152.13 0.576 3.6 -0.129 -- -- -- -- -0.0647 -- -- -- -- --
151.69 0.576 3.59 -- 0.128 -- -- -- -0.0533 4.46 -- -- -- --
150.23 0.573 3.59 -- -- -0.34 -- -- -0.0257 -- 2.654 98 12.9 10.2
152.57 0.577 3.59 -- -- -- -- -- -0.0505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.63 wind 7.0 10 > th dose dependent rect. 12 1
3 125.90 wind 7.0 10 > th dose independent rect. 12 1
5 135.23 radiation 1.0 43200 < th dose dependent rect. 3 1
6 136.75 wind 9.0 14400 < th dose independent rect. 9 1
7 136.84 wind 7.0 14400 > th dose independent rect. 3 8
8 136.86 wind 7.0 14400 > th dose independent rect. 24 11
12 137.01 wind 7.0 14400 < th dose independent rect. 3 8
16 137.06 wind 7.0 14400 < th dose independent rect. 24 11
19 137.21 wind 7.0 270 > th dose dependent rect. 8 1
21 137.39 radiation 1.0 4320 < th dose dependent rect. 3 1
26 137.45 wind 1.0 10 < th dose dependent rect. 2 1
27 137.45 wind 7.0 14400 > th dose dependent rect. 6 4
39 137.55 wind 7.0 14400 > th dose dependent rect. 4 7
47 137.65 wind 9.0 1440 < th dose independent rect. 3 1
48 137.65 temperature 10.0 1440 > th dose independent rect. 3 1
51 137.65 temperature 30.0 1440 < th dose independent rect. 3 1
55 137.65 humidity 50.0 1440 > th dose independent rect. 3 1
64 137.65 atmosphere 995.0 1440 > th dose independent rect. 3 1
65 137.65 radiation 1.0 1440 < th dose independent rect. 3 1
86 137.65 temperature 10.0 1440 > th dose independent rect. 4 23
99 137.72 wind 1.0 10 < th dose independent rect. 2 1
104 137.77 temperature 25.0 90 > th dose independent rect. 2 1
107 137.80 wind 5.0 14400 > th dose dependent rect. 24 12
110 137.83 temperature 25.0 90 > th dose dependent rect. 2 1
118 137.94 atmosphere 995.0 30 > th dose independent rect. 3 23
123 137.98 atmosphere 1005.0 30 > th dose independent rect. 2 1
128 138.01 humidity 90.0 30 > th dose independent rect. 2 1
132 138.03 atmosphere 1000.0 30 > th dose dependent rect. 2 1
134 138.04 wind 9.0 14400 > th dose independent rect. 9 1
147 138.08 humidity 80.0 30 > th dose dependent rect. 2 1
152 138.11 humidity 50.0 30 > th dose dependent rect. 2 1
155 138.13 temperature 10.0 30 > th dose independent rect. 2 1
157 138.13 temperature 30.0 30 < th dose independent rect. 2 1
158 138.13 humidity 50.0 30 > th dose independent rect. 2 1
162 138.13 atmosphere 1010.0 30 < th dose independent rect. 2 1
164 138.13 radiation 1.0 30 < th dose independent rect. 2 1
169 138.13 precipitation 0.1 30 < th dose independent rect. 2 1
170 138.13 temperature 10.0 30 > th dose independent rect. 3 23
171 138.13 radiation 1.0 30 < th dose dependent rect. 2 1
176 138.13 precipitation 0.1 30 < th dose dependent rect. 2 1
185 138.25 atmosphere 1015.0 30 < th dose dependent rect. 2 1
196 138.38 radiation 1.0 4320 > th dose independent rect. 6 1
197 138.39 temperature 30.0 30 < th dose dependent rect. 2 1
215 138.53 radiation 1.0 4320 < th dose independent rect. 6 1
228 138.67 wind 1.0 30 < th dose independent rect. 17 10
233 138.69 precipitation 0.1 30 < th dose independent rect. 3 23
236 138.69 precipitation 0.1 30 < th dose dependent rect. 3 23
244 138.74 wind 1.0 30 < th dose independent rect. 21 6
249 138.75 temperature 20.0 14400 < th dose independent rect. 7 2
273 138.78 wind 1.0 30 > th dose independent rect. 2 1
292 138.89 temperature 20.0 14400 > th dose independent rect. 8 1
301 138.95 radiation 1.0 4320 > th dose independent rect. 4 4
311 138.96 wind 1.0 30 < th dose independent rect. 24 3
312 138.96 wind 1.0 10 < th dose independent rect. 14 13
314 138.97 temperature 20.0 14400 < th dose independent rect. 6 5
315 138.97 radiation 1.0 4320 < th dose independent rect. 3 5
316 138.97 radiation 1.0 4320 < th dose independent rect. 24 8
327 139.00 wind 1.0 30 < th dose dependent rect. 17 10
330 139.02 temperature 20.0 14400 > th dose independent rect. 6 6
345 139.05 wind 1.0 30 < th dose dependent rect. 21 6
373 139.11 wind 3.0 10 < th dose dependent rect. 23 4
377 139.13 wind 7.0 14400 < th dose independent rect. 7 3
392 139.20 temperature 20.0 14400 < th dose independent sin 0 NA
402 139.23 temperature 20.0 14400 > th dose independent sin 1 NA
419 139.27 radiation 40.0 1440 < th dose dependent rect. 18 10
510 139.48 temperature 25.0 14400 < th dose independent rect. 11 1
527 139.53 temperature 25.0 14400 > th dose independent rect. 11 1
532 139.54 wind 7.0 14400 < th dose independent sin 7 NA
649 139.69 temperature 20.0 14400 < th dose dependent rect. 6 2
658 139.70 wind 1.0 30 < th dose dependent rect. 14 13
661 139.71 wind 9.0 1440 < th dose independent rect. 4 6
711 139.75 wind 5.0 14400 < th dose independent rect. 10 1
721 139.76 wind 7.0 14400 > th dose independent sin 7 NA
760 139.78 temperature 20.0 14400 > th dose independent rect. 6 21
833 139.85 temperature 20.0 14400 < th dose independent no NA NA
846 139.86 temperature 20.0 14400 < th dose independent rect. 13 23
849 139.87 temperature 20.0 14400 > th dose independent no NA NA
866 139.88 temperature 20.0 14400 > th dose independent rect. 13 23
965 139.96 wind 5.0 14400 > th dose dependent sin 7 NA
981 139.97 temperature 20.0 14400 < th dose dependent rect. 4 19