Os08g0215300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0215300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.49 | 0.337 | 11 | -1.03 | 1.06 | -0.241 | -0.269 | 4.08 | -0.369 | 7.76 | 1005 | 10 | -- | -- |
| 54.23 | 0.343 | 11 | -1.19 | 1.05 | 0.64 | -0.202 | -- | -0.331 | 7.72 | 1001 | 36 | -- | -- |
| 51.68 | 0.337 | 11 | -1.04 | 1.06 | -0.23 | -- | 4.03 | -0.369 | 7.75 | 1005 | 10 | -- | -- |
| 54.35 | 0.343 | 11 | -1.19 | 1.05 | 0.629 | -- | -- | -0.335 | 7.71 | 1001 | 70 | -- | -- |
| 112.08 | 0.496 | 11 | -1.02 | -- | -0.216 | -- | 3.9 | -0.345 | -- | 1004 | 24 | -- | -- |
| 58.02 | 0.357 | 11 | -1.12 | 1.05 | -- | -0.233 | -- | -0.357 | 7.73 | -- | -- | -- | -- |
| 58.18 | 0.357 | 11 | -1.13 | 1.05 | -- | -- | -- | -0.356 | 7.72 | -- | -- | -- | -- |
| 113.8 | 0.499 | 11 | -1.17 | -- | 0.626 | -- | -- | -0.32 | -- | 1001 | 13 | -- | -- |
| 89.84 | 0.441 | 10.9 | -- | 1.05 | 0.603 | -- | -- | -0.219 | 7.83 | 997.3 | 563 | -- | -- |
| 117.41 | 0.506 | 11 | -1.12 | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
| 91.8 | 0.448 | 10.9 | -- | 1.04 | -- | -- | -- | -0.231 | 7.8 | -- | -- | -- | -- |
| 147.79 | 0.566 | 11 | -- | -- | 0.7 | -- | -- | -0.202 | -- | 997.5 | 1339 | -- | -- |
| 150.27 | 0.572 | 11 | -- | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.98 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 49.98 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 3 | 50.30 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 17 | 50.97 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 32 | 51.33 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 34 | 51.39 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 49 | 51.52 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 51 | 51.52 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 56 | 51.56 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 60 | 51.58 | atmosphere | 1005.0 | 10 | < th | dose dependent | no | NA | NA |
| 66 | 51.58 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 67 | 51.59 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 69 | 51.60 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 70 | 51.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 71 | 51.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 74 | 51.63 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 77 | 51.64 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 82 | 51.66 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 83 | 51.67 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 85 | 51.67 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 118 | 51.79 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 122 | 51.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 145 | 51.87 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 147 | 51.89 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 153 | 51.90 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 160 | 51.93 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 170 | 51.97 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 204 | 52.05 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 219 | 52.08 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 235 | 52.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 246 | 52.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 263 | 52.17 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 277 | 52.19 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 278 | 52.19 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 279 | 52.19 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 287 | 52.20 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 288 | 52.20 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 292 | 52.20 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 299 | 52.21 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 306 | 52.22 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 308 | 52.22 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 324 | 52.23 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 420 | 52.28 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 428 | 52.29 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 462 | 52.33 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 492 | 52.37 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 514 | 52.41 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 620 | 52.48 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 634 | 52.51 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 680 | 52.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 694 | 52.56 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 700 | 52.57 | temperature | 30.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 701 | 52.57 | temperature | 30.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 703 | 52.57 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 709 | 52.57 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 728 | 52.58 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 832 | 52.62 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 919 | 52.65 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 979 | 52.67 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 982 | 52.67 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |