Os08g0213400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0213400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.66 | 0.208 | 11.7 | -0.896 | 0.0724 | -0.557 | -0.315 | 0.318 | -0.11 | 3.3 | 29.89 | 114 | -- | -- |
| 19.75 | 0.207 | 11.7 | -0.838 | 0.0726 | -0.566 | -0.218 | -- | -0.0995 | 3.22 | 29.7 | 115 | -- | -- |
| 19.89 | 0.208 | 11.7 | -0.846 | 0.0758 | -0.563 | -- | 0.0603 | -0.099 | 2.64 | 29.8 | 113 | -- | -- |
| 19.89 | 0.208 | 11.7 | -0.839 | 0.0772 | -0.57 | -- | -- | -0.0976 | 2.75 | 29.77 | 113 | -- | -- |
| 20.2 | 0.209 | 11.7 | -0.841 | -- | -0.57 | -- | 0.199 | -0.0715 | -- | 41.61 | 89 | -- | -- |
| 23.92 | 0.229 | 11.7 | -0.703 | 0.107 | -- | 0.296 | -- | 0.0131 | 15.6 | -- | -- | -- | -- |
| 24.18 | 0.23 | 11.7 | -0.698 | 0.108 | -- | -- | -- | 0.0147 | 15.4 | -- | -- | -- | -- |
| 20.14 | 0.209 | 11.7 | -0.808 | -- | -0.507 | -- | -- | -0.0865 | -- | 29.7 | 125 | -- | -- |
| 36.32 | 0.282 | 11.6 | -- | 0.0554 | -0.26 | -- | -- | 0.0615 | 16.8 | 58.65 | 53 | -- | -- |
| 24.84 | 0.233 | 11.7 | -0.703 | -- | -- | -- | -- | 0.0119 | -- | -- | -- | -- | -- |
| 37.04 | 0.285 | 11.6 | -- | 0.122 | -- | -- | -- | 0.0925 | 15.4 | -- | -- | -- | -- |
| 36.45 | 0.282 | 11.6 | -- | -- | -0.305 | -- | -- | 0.0553 | -- | 88.61 | 29 | -- | -- |
| 37.88 | 0.287 | 11.6 | -- | -- | -- | -- | -- | 0.0899 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 2 | 16.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 6 | 16.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 49 | 17.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 69 | 17.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 85 | 17.97 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 89 | 17.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 96 | 18.01 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 99 | 18.03 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 8 |
| 111 | 18.11 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 122 | 18.15 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 17 |
| 193 | 18.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 197 | 18.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 270 | 18.76 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 339 | 18.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 350 | 19.00 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 374 | 19.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 394 | 19.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 401 | 19.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 442 | 19.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 467 | 19.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 485 | 19.28 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 21 | 8 |
| 496 | 19.30 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 9 | 17 |
| 497 | 19.30 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 20 |
| 516 | 19.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 542 | 19.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 573 | 19.43 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 583 | 19.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 662 | 19.56 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 21 | 8 |
| 689 | 19.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 778 | 19.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 796 | 19.72 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 818 | 19.75 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 829 | 19.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 832 | 19.77 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 17 |
| 847 | 19.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 859 | 19.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 863 | 19.80 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 16 |
| 886 | 19.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 888 | 19.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 897 | 19.82 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 907 | 19.83 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 10 | 19 |
| 908 | 19.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 915 | 19.84 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 916 | 19.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 12 |
| 986 | 19.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |