Os08g0208700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os08g0208700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.97 | 0.315 | 8.31 | -0.745 | 0.191 | -0.194 | 0.249 | -1.89 | 0.488 | 22.7 | 80.64 | 6124 | -- | -- |
| 49.05 | 0.326 | 8.3 | -0.671 | 0.177 | -0.288 | 0.241 | -- | 0.506 | 22.8 | 76.37 | 3085 | -- | -- |
| 45.21 | 0.313 | 8.31 | -0.756 | 0.189 | -0.189 | -- | -1.91 | 0.487 | 22.6 | 81 | 6069 | -- | -- |
| 49.08 | 0.326 | 8.33 | -0.684 | 0.172 | -0.304 | -- | -- | 0.461 | 22.4 | 74.1 | 3182 | -- | -- |
| 47.42 | 0.321 | 8.3 | -0.756 | -- | -0.188 | -- | -1.84 | 0.489 | -- | 81.4 | 6038 | -- | -- |
| 50.9 | 0.334 | 8.32 | -0.678 | 0.18 | -- | 0.238 | -- | 0.481 | 22.8 | -- | -- | -- | -- |
| 51.13 | 0.335 | 8.32 | -0.688 | 0.18 | -- | -- | -- | 0.481 | 22.5 | -- | -- | -- | -- |
| 51.04 | 0.333 | 8.32 | -0.658 | -- | -0.319 | -- | -- | 0.457 | -- | 76 | 3077 | -- | -- |
| 55.56 | 0.347 | 8.31 | -- | 0.186 | -0.568 | -- | -- | 0.515 | 22.3 | 36.38 | 6355 | -- | -- |
| 53.12 | 0.341 | 8.31 | -0.684 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 63.59 | 0.373 | 8.3 | -- | 0.176 | -- | -- | -- | 0.558 | 22.2 | -- | -- | -- | -- |
| 57.67 | 0.354 | 8.31 | -- | -- | -0.559 | -- | -- | 0.515 | -- | 37.22 | 6652 | -- | -- |
| 65.48 | 0.378 | 8.3 | -- | -- | -- | -- | -- | 0.558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 2 | 42.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 5 | 42.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 7 | 42.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 15 | 43.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 16 | 43.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 20 | 43.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 21 | 43.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 9 |
| 23 | 43.26 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 29 | 43.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 31 | 43.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 33 | 43.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 7 |
| 35 | 43.36 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 7 |
| 39 | 43.37 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 41 | 43.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 43 | 43.39 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 63 | 43.53 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 77 | 43.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 80 | 43.60 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 97 | 43.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 108 | 43.73 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 125 | 43.82 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 129 | 43.84 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 138 | 43.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 139 | 43.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 140 | 43.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 142 | 43.88 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 148 | 43.90 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 150 | 43.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 7 |
| 178 | 43.97 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 237 | 44.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 245 | 44.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 286 | 44.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 294 | 44.37 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 301 | 44.40 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 307 | 44.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 313 | 44.42 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 317 | 44.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 336 | 44.47 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 344 | 44.49 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 357 | 44.53 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 366 | 44.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 368 | 44.55 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 395 | 44.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 15 |
| 400 | 44.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 405 | 44.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 411 | 44.63 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 458 | 44.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 475 | 44.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 483 | 44.73 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 3 | NA |
| 487 | 44.73 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 491 | 44.74 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 3 | NA |
| 501 | 44.74 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 3 | NA |
| 512 | 44.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 12 |
| 513 | 44.75 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 12 |
| 517 | 44.75 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 12 |
| 567 | 44.79 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 571 | 44.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 597 | 44.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 639 | 44.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 663 | 44.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 678 | 44.90 | humidity | 50.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 685 | 44.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 12 |
| 704 | 44.92 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 709 | 44.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 10 |
| 731 | 44.94 | wind | 9.0 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 739 | 44.95 | humidity | 50.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 740 | 44.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 779 | 44.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 814 | 44.99 | wind | 9.0 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 818 | 44.99 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 832 | 45.00 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 880 | 45.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 912 | 45.07 | humidity | 90.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 913 | 45.07 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 919 | 45.07 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 935 | 45.08 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 939 | 45.08 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 940 | 45.08 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 946 | 45.09 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 967 | 45.10 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 992 | 45.12 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 999 | 45.13 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 4 |