Os08g0208400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : En/Spm-like transposon proteins family protein.
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Os08g0208400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : En/Spm-like transposon proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.12 | 0.399 | 7.38 | 0.0496 | 0.423 | -0.918 | -0.567 | -0.0619 | 0.25 | 5.41 | 78.69 | 1272 | -- | -- |
| 71.44 | 0.394 | 7.38 | 0.116 | 0.454 | -0.864 | -0.649 | -- | 0.29 | 5.13 | 76 | 1246 | -- | -- |
| 72.67 | 0.397 | 7.38 | 0.0991 | 0.434 | -0.889 | -- | -0.015 | 0.267 | 5.35 | 76.82 | 1268 | -- | -- |
| 72.18 | 0.396 | 7.37 | 0.0998 | 0.414 | -0.831 | -- | -- | 0.28 | 5.56 | 76 | 1279 | -- | -- |
| 75.87 | 0.406 | 7.4 | 0.0604 | -- | -0.607 | -- | -0.0441 | 0.222 | -- | 76.8 | 686 | -- | -- |
| 83.46 | 0.428 | 7.39 | 0.0114 | 0.368 | -- | -0.533 | -- | 0.207 | 6.19 | -- | -- | -- | -- |
| 84.07 | 0.429 | 7.39 | 0.00692 | 0.367 | -- | -- | -- | 0.21 | 6.59 | -- | -- | -- | -- |
| 75.88 | 0.406 | 7.4 | 0.0656 | -- | -0.607 | -- | -- | 0.225 | -- | 76.79 | 686 | -- | -- |
| 72.44 | 0.396 | 7.38 | -- | 0.412 | -0.815 | -- | -- | 0.268 | 5.59 | 76 | 1279 | -- | -- |
| 91.08 | 0.446 | 7.4 | 0.0158 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 84.07 | 0.429 | 7.39 | -- | 0.367 | -- | -- | -- | 0.209 | 6.59 | -- | -- | -- | -- |
| 75.99 | 0.406 | 7.4 | -- | -- | -0.603 | -- | -- | 0.218 | -- | 76.84 | 685 | -- | -- |
| 91.09 | 0.445 | 7.4 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.29 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 2 | 69.36 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 69.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 7 | 69.50 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 23 | 70.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 25 | 70.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 69 | 70.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 86 | 71.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 94 | 71.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 96 | 71.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 105 | 71.28 | humidity | 80 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 149 | 71.57 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 172 | 71.71 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 180 | 71.78 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 188 | 71.82 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 194 | 71.85 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 206 | 71.90 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 255 | 72.21 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 19 |
| 258 | 72.24 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 266 | 72.27 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 269 | 72.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 275 | 72.34 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 294 | 72.43 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 301 | 72.47 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 343 | 72.65 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 17 |
| 354 | 72.71 | humidity | 80 | 720 | < th | dose independent | sin | 16 | NA |
| 360 | 72.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 419 | 72.94 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 426 | 72.96 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 14 |
| 427 | 72.96 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 444 | 73.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 447 | 73.01 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 476 | 73.08 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 529 | 73.26 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 538 | 73.28 | humidity | 80 | 720 | > th | dose independent | sin | 15 | NA |
| 581 | 73.36 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 619 | 73.42 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 644 | 73.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 661 | 73.50 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 23 |
| 663 | 73.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 672 | 73.52 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 687 | 73.55 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 728 | 73.61 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 747 | 73.63 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 785 | 73.70 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 802 | 73.72 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 22 |
| 816 | 73.74 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 836 | 73.75 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 858 | 73.78 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 22 |
| 885 | 73.81 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 897 | 73.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 914 | 73.85 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 920 | 73.85 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 23 |
| 923 | 73.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 930 | 73.87 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 12 |