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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0207800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0377) R2 : 0.169
β1 : -0.755 (0.133) R2dD : 0.0612 R2D : 0.0377
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.881 (0.119) R2dE : 0.138 R2E : -0.0237
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.507 (0.09) R2dN8 : 0.105 R2N8 : -0.00296
σ : 0.678
deviance : 211.63
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 17.91
memory length : 22286
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.16 0.639 3.77 -1.85 0.568 0.493 -1.19 5.91 -0.112 6.35 0.2879 4384 -- --
206.1 0.669 3.65 -0.815 0.605 0.449 -1.27 -- 0.12 6.85 10 16118 -- --
188.39 0.639 3.77 -1.89 0.569 0.549 -- 5.97 -0.108 6.38 0.24 4358 -- --
200.57 0.66 3.55 -0.74 0.476 0.769 -- -- 0.428 6.68 19.99 22193 -- --
205.07 0.667 3.77 -1.86 -- 0.506 -- 5.97 -0.107 -- 0.2371 4390 -- --
217.18 0.691 3.6 -0.697 0.553 -- -1.29 -- 0.151 6.54 -- -- -- --
221.29 0.697 3.6 -0.717 0.55 -- -- -- 0.155 6.28 -- -- -- --
211.63 0.678 3.53 -0.755 -- 0.881 -- -- 0.507 -- 17.91 22286 -- --
215.49 0.684 3.52 -- 0.46 0.779 -- -- 0.545 6.55 16.17 22136 -- --
237.01 0.719 3.61 -0.702 -- -- -- -- 0.166 -- -- -- -- --
234.82 0.717 3.58 -- 0.541 -- -- -- 0.234 6.35 -- -- -- --
225.99 0.7 3.52 -- -- 0.865 -- -- 0.59 -- 15.3 22262 -- --
250 0.738 3.59 -- -- -- -- -- 0.244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.16 humidity 80.0 43200 < th dose independent rect. 17 1
2 182.40 humidity 80.0 43200 > th dose independent rect. 17 2
3 182.51 radiation 1.0 4320 > th dose independent rect. 17 2
13 182.79 radiation 1.0 43200 < th dose dependent rect. 23 6
17 182.83 radiation 1.0 4320 < th dose dependent rect. 18 8
24 182.98 radiation 1.0 43200 < th dose dependent rect. 4 1
25 183.01 radiation 1.0 4320 < th dose dependent rect. 18 1
37 183.45 radiation 1.0 43200 < th dose independent rect. 18 7
40 183.52 radiation 1.0 43200 < th dose independent rect. 18 1
47 183.55 radiation 1.0 4320 < th dose dependent rect. 17 13
52 183.65 radiation 1.0 4320 < th dose dependent rect. 17 17
63 183.79 humidity 90.0 14400 > th dose independent rect. 23 7
64 183.79 radiation 1.0 4320 < th dose dependent sin 12 NA
67 183.89 humidity 90.0 14400 > th dose independent rect. 23 5
71 184.00 radiation 1.0 4320 < th dose independent rect. 17 9
75 184.14 radiation 1.0 4320 < th dose independent rect. 17 2
85 184.20 humidity 90.0 14400 < th dose independent rect. 23 5
113 184.88 humidity 90.0 14400 < th dose independent rect. 23 7
133 185.38 radiation 1.0 43200 < th dose dependent rect. 6 23
134 185.40 radiation 1.0 43200 < th dose dependent rect. 6 19
139 185.41 radiation 1.0 43200 < th dose dependent rect. 6 13
167 185.57 precipitation 0.1 43200 < th dose independent rect. 14 1
169 185.57 precipitation 0.1 43200 < th dose dependent rect. 14 1
170 185.58 precipitation 0.1 43200 > th dose independent rect. 14 1
171 185.58 precipitation 0.1 43200 > th dose dependent rect. 14 1
187 185.71 radiation 1.0 43200 < th dose dependent sin 0 NA
193 185.78 wind 1.0 43200 > th dose independent rect. 5 1
199 185.78 radiation 1.0 43200 < th dose dependent rect. 18 23
200 185.79 precipitation 0.1 43200 < th dose independent rect. 24 1
201 185.79 precipitation 0.1 43200 < th dose dependent rect. 24 1
215 185.83 humidity 80.0 14400 > th dose dependent rect. 24 3
220 185.88 radiation 1.0 43200 < th dose dependent rect. 18 19
224 185.92 radiation 1.0 43200 < th dose dependent rect. 18 17
225 185.93 wind 1.0 43200 < th dose independent rect. 5 2
243 186.02 radiation 1.0 43200 < th dose dependent rect. 3 12
250 186.04 radiation 1.0 43200 < th dose dependent rect. 22 17
264 186.10 radiation 1.0 43200 < th dose dependent no NA NA
269 186.10 radiation 1.0 43200 < th dose dependent rect. 4 15
295 186.10 radiation 1.0 43200 < th dose dependent rect. 22 21
308 186.10 radiation 1.0 43200 < th dose dependent rect. 12 23
332 186.11 radiation 1.0 43200 < th dose dependent rect. 14 23
353 186.15 radiation 1.0 43200 < th dose independent rect. 7 18
362 186.16 radiation 1.0 43200 < th dose independent rect. 7 12
378 186.17 temperature 20.0 43200 < th dose independent rect. 6 1
405 186.20 radiation 1.0 43200 < th dose dependent rect. 4 7
434 186.22 radiation 1.0 4320 > th dose independent sin 13 NA
435 186.22 temperature 20.0 43200 > th dose independent rect. 6 1
436 186.22 radiation 1.0 43200 > th dose independent rect. 7 12
454 186.24 radiation 1.0 43200 > th dose independent rect. 6 3
461 186.26 radiation 1.0 43200 < th dose independent rect. 6 3
493 186.28 radiation 1.0 4320 < th dose dependent rect. 8 23
499 186.30 humidity 90.0 14400 > th dose dependent rect. 4 2
502 186.30 radiation 1.0 4320 < th dose dependent rect. 10 21
521 186.33 radiation 1.0 43200 > th dose independent rect. 18 1
533 186.34 wind 1.0 43200 < th dose independent rect. 2 6
543 186.38 humidity 80.0 14400 > th dose dependent rect. 1 1
569 186.43 radiation 1.0 4320 < th dose dependent rect. 10 23
574 186.45 precipitation 0.1 43200 > th dose independent rect. 24 1
576 186.45 precipitation 0.1 43200 > th dose dependent rect. 24 1
582 186.47 precipitation 0.1 43200 > th dose independent rect. 12 3
586 186.48 precipitation 0.1 43200 < th dose independent rect. 12 3
589 186.48 precipitation 0.1 43200 < th dose dependent rect. 12 3
634 186.59 temperature 20.0 43200 < th dose independent rect. 5 3
655 186.65 humidity 90.0 4320 > th dose independent rect. 23 1
656 186.65 temperature 20.0 43200 > th dose independent rect. 5 3
659 186.65 wind 1.0 14400 < th dose dependent rect. 19 6
660 186.65 radiation 1.0 43200 < th dose dependent rect. 15 14
668 186.71 radiation 1.0 4320 < th dose dependent rect. 22 21
669 186.71 radiation 1.0 4320 < th dose dependent rect. 4 22
671 186.72 radiation 1.0 4320 < th dose independent sin 13 NA
672 186.72 radiation 1.0 4320 < th dose dependent no NA NA
673 186.72 radiation 1.0 4320 < th dose dependent rect. 24 19
685 186.72 radiation 1.0 4320 < th dose dependent rect. 24 23
694 186.74 wind 1.0 14400 < th dose independent rect. 19 7
702 186.76 radiation 1.0 4320 < th dose dependent rect. 4 15
732 186.79 temperature 20.0 43200 < th dose independent rect. 1 7
734 186.79 temperature 20.0 43200 < th dose independent rect. 23 10
755 186.83 temperature 20.0 43200 > th dose independent rect. 1 8
765 186.86 temperature 20.0 43200 > th dose independent rect. 23 10
770 186.87 temperature 20.0 43200 < th dose independent rect. 23 1
789 186.89 radiation 1.0 43200 < th dose independent sin 23 NA
790 186.89 temperature 20.0 43200 > th dose independent rect. 1 1
824 186.92 radiation 1.0 43200 < th dose dependent rect. 15 10
826 186.93 radiation 1.0 43200 < th dose independent rect. 18 23
857 186.96 radiation 1.0 43200 > th dose independent sin 23 NA
871 186.97 radiation 1.0 43200 > th dose independent rect. 6 8
893 186.98 radiation 1.0 4320 > th dose independent rect. 16 19
895 186.98 humidity 90.0 14400 > th dose dependent rect. 23 7
897 186.99 temperature 20.0 43200 < th dose independent rect. 1 1
901 187.00 radiation 1.0 43200 < th dose independent rect. 6 8
909 187.01 radiation 1.0 4320 > th dose independent rect. 16 17
928 187.03 radiation 1.0 43200 > th dose independent rect. 18 23
931 187.04 temperature 20.0 43200 < th dose independent rect. 22 6
960 187.08 temperature 20.0 43200 > th dose independent rect. 22 6
971 187.11 temperature 20.0 43200 < th dose independent sin 7 NA
994 187.14 temperature 20.0 43200 > th dose independent sin 7 NA