Os08g0207600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein ERG.
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Os08g0207600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein ERG.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.58 | 0.392 | 9.72 | 0.729 | 1.71 | 0.429 | 0.315 | 0.0195 | 0.0342 | 17.5 | 20.39 | 10 | -- | -- |
| 69.59 | 0.389 | 9.72 | 0.729 | 1.71 | 0.429 | 0.318 | -- | 0.0342 | 17.4 | 20.41 | 10 | -- | -- |
| 69.82 | 0.389 | 9.72 | 0.729 | 1.71 | 0.422 | -- | 0.0319 | 0.0357 | 17.4 | 20.51 | 9 | -- | -- |
| 69.83 | 0.389 | 9.72 | 0.73 | 1.71 | 0.423 | -- | -- | 0.0359 | 17.4 | 20.54 | 9 | -- | -- |
| 109.38 | 0.487 | 9.57 | 0.434 | -- | 1.76 | -- | 1.15 | -0.357 | -- | 0.7184 | 603 | -- | -- |
| 76.59 | 0.41 | 9.71 | 0.773 | 1.82 | -- | 0.23 | -- | 0.0397 | 16.8 | -- | -- | -- | -- |
| 76.72 | 0.41 | 9.71 | 0.774 | 1.82 | -- | -- | -- | 0.0409 | 16.8 | -- | -- | -- | -- |
| 78.98 | 0.414 | 9.7 | 0.616 | -- | 1.92 | -- | -- | -0.0662 | -- | 0.67 | 596 | -- | -- |
| 83.79 | 0.426 | 9.73 | -- | 1.67 | 0.484 | -- | -- | -0.0338 | 17.5 | 20.39 | 10 | -- | -- |
| 252.25 | 0.742 | 9.69 | 0.706 | -- | -- | -- | -- | -0.00644 | -- | -- | -- | -- | -- |
| 92.53 | 0.45 | 9.73 | -- | 1.81 | -- | -- | -- | -0.0454 | 16.8 | -- | -- | -- | -- |
| 88.07 | 0.437 | 9.72 | -- | -- | 1.97 | -- | -- | -0.118 | -- | 0.1712 | 607 | -- | -- |
| 265.4 | 0.76 | 9.71 | -- | -- | -- | -- | -- | -0.0848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.78 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 54.95 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 5 | 55.75 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 9 | 56.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 15 | 56.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 29 | 57.09 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 31 | 57.14 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 32 | 57.27 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 45 | 57.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 46 | 57.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 48 | 57.81 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 50 | 57.82 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 56 | 57.92 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 63 | 57.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 64 | 57.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 80 | 58.20 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 90 | 58.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 92 | 58.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 93 | 58.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 95 | 58.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 96 | 58.27 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 97 | 58.27 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 98 | 58.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 104 | 58.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 115 | 58.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 137 | 58.76 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 161 | 58.87 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 178 | 58.97 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 212 | 59.21 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 225 | 59.28 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 230 | 59.31 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 275 | 59.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 280 | 59.45 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 285 | 59.49 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 289 | 59.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 306 | 59.56 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 326 | 59.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 407 | 59.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 419 | 59.98 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 436 | 60.06 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 448 | 60.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 463 | 60.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 466 | 60.22 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 475 | 60.25 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 477 | 60.26 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 492 | 60.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 495 | 60.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 496 | 60.30 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 498 | 60.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 537 | 60.43 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 543 | 60.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 560 | 60.51 | wind | 7.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 594 | 60.58 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 619 | 60.66 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 622 | 60.67 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 648 | 60.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 683 | 60.77 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 710 | 60.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 789 | 61.12 | wind | 5.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 792 | 61.13 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 801 | 61.16 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 830 | 61.24 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 835 | 61.26 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 842 | 61.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 876 | 61.34 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 880 | 61.34 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 885 | 61.36 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 896 | 61.41 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 910 | 61.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 981 | 61.57 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 984 | 61.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 990 | 61.59 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 994 | 61.59 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |