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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0207300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0415) R2 : 0.0143
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.225 (0.0873) R2dN8 : 0.0185 R2N8 : 0.0143
σ : 0.781
deviance : 280.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.92 0.768 2.96 0.271 0.289 0.465 -0.605 1.05 -0.249 8.18 3.04 321 -- --
269.82 0.765 2.94 0.275 0.297 0.476 -0.786 -- -0.226 7.96 2.912 321 -- --
267.82 0.762 2.96 0.256 0.286 0.455 -- 1.29 -0.249 7.98 3 320 -- --
272.65 0.769 2.93 0.247 0.336 0.494 -- -- -0.234 7.35 2.964 300 -- --
270.29 0.766 2.97 0.238 -- 0.288 -- 1.47 -0.263 -- 3.291 389 -- --
277.09 0.78 2.93 0.119 0.0383 -- -0.9 -- -0.214 9 -- -- -- --
279.18 0.782 2.94 0.0931 0.115 -- -- -- -0.212 14 -- -- -- --
273.42 0.77 2.95 0.228 -- 0.532 -- -- -0.252 -- 1.5 261 -- --
274.12 0.771 2.94 -- 0.311 0.43 -- -- -0.249 7.53 2.999 300 -- --
279.98 0.782 2.94 0.0883 -- -- -- -- -0.215 -- -- -- -- --
279.41 0.782 2.94 -- 0.113 -- -- -- -0.222 14 -- -- -- --
274.63 0.772 2.95 -- -- 0.465 -- -- -0.279 -- 1.527 259 -- --
280.19 0.781 2.94 -- -- -- -- -- -0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.27 radiation 1.0 270 < th dose dependent rect. 7 1
5 258.02 humidity 90.0 270 > th dose dependent rect. 6 2
7 258.59 atmosphere 1005.0 270 < th dose independent rect. 6 2
9 259.01 atmosphere 1005.0 90 < th dose independent rect. 6 5
13 260.04 wind 5.0 720 < th dose independent rect. 23 9
15 260.74 radiation 1.0 270 < th dose independent rect. 7 1
18 261.07 wind 5.0 10 > th dose dependent rect. 23 12
21 261.30 temperature 20.0 270 < th dose independent rect. 6 2
30 261.94 humidity 50.0 10 < th dose independent rect. 11 1
122 261.94 humidity 50.0 10 < th dose dependent rect. 11 1
216 262.06 atmosphere 1005.0 10 < th dose independent rect. 7 3
221 262.26 wind 3.0 720 > th dose dependent rect. 24 7
225 262.45 wind 5.0 720 > th dose independent rect. 24 7
226 262.47 precipitation 0.1 1440 > th dose independent rect. 22 1
227 262.47 precipitation 0.1 1440 > th dose dependent rect. 22 1
230 262.57 humidity 90.0 270 > th dose independent rect. 6 2
250 263.17 wind 5.0 10 > th dose dependent rect. 23 6
266 263.69 temperature 20.0 30 < th dose independent rect. 7 1
269 263.69 temperature 20.0 30 < th dose dependent rect. 7 1
276 263.84 wind 5.0 10 > th dose independent rect. 23 6
285 263.91 wind 5.0 10 > th dose dependent rect. 23 1
308 264.07 atmosphere 1010.0 270 < th dose dependent rect. 7 1
330 264.35 atmosphere 1005.0 10 < th dose independent rect. 5 1
354 264.48 atmosphere 1010.0 90 < th dose dependent rect. 6 5
398 264.86 radiation 20.0 720 < th dose independent rect. 6 2
415 265.00 wind 3.0 720 > th dose independent rect. 18 9
423 265.04 wind 5.0 720 < th dose independent rect. 20 7
427 265.09 atmosphere 1005.0 90 < th dose independent rect. 6 9
431 265.11 radiation 1.0 30 < th dose dependent rect. 7 1
438 265.16 precipitation 0.1 90 > th dose independent rect. 23 2
439 265.16 precipitation 0.1 90 > th dose dependent rect. 23 2
441 265.19 wind 3.0 720 > th dose independent rect. 18 12
447 265.23 humidity 60.0 90 > th dose independent rect. 6 23
481 265.44 temperature 30.0 270 > th dose dependent sin 9 NA
521 265.83 radiation 20.0 720 < th dose independent rect. 23 9
532 265.87 temperature 20.0 90 < th dose independent rect. 4 1
560 265.98 temperature 30.0 720 < th dose independent rect. 8 7
576 266.04 wind 3.0 270 < th dose independent rect. 6 22
586 266.07 wind 7.0 10 < th dose dependent rect. 21 21
587 266.08 wind 3.0 720 > th dose dependent sin 10 NA
589 266.09 temperature 20.0 10 < th dose independent rect. 4 2
595 266.10 wind 3.0 270 > th dose independent rect. 13 22
598 266.11 temperature 20.0 30 < th dose dependent rect. 4 2
611 266.16 wind 9.0 720 < th dose dependent rect. 20 7
620 266.19 wind 3.0 720 < th dose independent rect. 17 10
631 266.24 wind 7.0 720 > th dose independent rect. 21 4
643 266.27 atmosphere 1005.0 90 < th dose independent rect. 6 11
652 266.32 atmosphere 1010.0 10 < th dose dependent rect. 7 5
653 266.33 wind 3.0 720 > th dose independent sin 12 NA
655 266.34 wind 3.0 270 > th dose independent rect. 8 20
671 266.39 precipitation 0.1 720 < th dose independent rect. 20 7
673 266.39 precipitation 0.1 720 < th dose dependent rect. 20 7
704 266.49 wind 5.0 720 < th dose independent sin 10 NA
740 266.57 precipitation 0.1 720 > th dose independent rect. 20 6
743 266.57 precipitation 0.1 720 > th dose dependent rect. 20 6
760 266.61 wind 5.0 10 > th dose dependent sin 9 NA
774 266.64 wind 3.0 270 < th dose dependent rect. 6 22
790 266.66 temperature 30.0 720 < th dose independent rect. 20 15
791 266.66 wind 1.0 90 > th dose dependent rect. 4 1
796 266.67 temperature 30.0 270 < th dose independent rect. 8 23
797 266.67 temperature 30.0 720 < th dose dependent rect. 7 1
800 266.68 temperature 30.0 270 > th dose dependent rect. 17 20
822 266.70 wind 3.0 270 < th dose dependent rect. 8 19
825 266.74 precipitation 0.1 720 > th dose independent rect. 24 1
828 266.74 precipitation 0.1 720 > th dose dependent rect. 24 1
831 266.74 temperature 30.0 270 > th dose dependent rect. 18 17
858 266.80 temperature 20.0 30 < th dose dependent rect. 4 6
860 266.81 wind 3.0 720 < th dose independent rect. 23 2
878 266.85 wind 3.0 720 < th dose independent rect. 17 15
885 266.88 wind 5.0 10 < th dose independent rect. 21 21
897 266.92 temperature 30.0 720 < th dose independent rect. 23 16
902 266.92 humidity 50.0 30 > th dose dependent rect. 6 23
916 266.97 wind 3.0 270 > th dose independent rect. 1 23
920 266.98 temperature 20.0 10 < th dose independent rect. 4 16
933 267.01 wind 5.0 10 > th dose independent sin 8 NA
945 267.03 humidity 90.0 1440 < th dose independent rect. 15 1
946 267.03 humidity 60.0 10 > th dose independent rect. 20 23
963 267.07 humidity 60.0 4320 < th dose dependent rect. 16 1
984 267.11 wind 3.0 270 < th dose independent rect. 13 14
990 267.11 wind 9.0 90 < th dose dependent rect. 6 23