Os08g0206600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AICARFT/IMPCHase bienzyme family protein.
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Os08g0206600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AICARFT/IMPCHase bienzyme family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.9 | 0.351 | 12.3 | -1.07 | 0.992 | 1.15 | 0.363 | -0.907 | -0.607 | 18.4 | 25.5 | 10 | -- | -- |
| 56.03 | 0.351 | 12.3 | -0.972 | 0.999 | 1.1 | 0.317 | -- | -0.581 | 18.4 | 25.5 | 7 | -- | -- |
| 56.01 | 0.351 | 12.3 | -1.07 | 0.994 | 1.2 | -- | -0.849 | -0.599 | 18.5 | 25.58 | 9 | -- | -- |
| 56.27 | 0.352 | 12.3 | -0.98 | 0.995 | 1.12 | -- | -- | -0.581 | 18.4 | 25.5 | 7 | -- | -- |
| 89.97 | 0.442 | 12.4 | -1.22 | -- | 1.67 | -- | -0.921 | -0.726 | -- | 24.2 | 184 | -- | -- |
| 72.93 | 0.4 | 12.3 | -0.818 | 1.27 | -- | 0.797 | -- | -0.521 | 17.4 | -- | -- | -- | -- |
| 74.49 | 0.404 | 12.3 | -0.82 | 1.28 | -- | -- | -- | -0.517 | 17.4 | -- | -- | -- | -- |
| 90.84 | 0.444 | 12.3 | -1.11 | -- | 1.59 | -- | -- | -0.696 | -- | 24.2 | 182 | -- | -- |
| 80.65 | 0.421 | 12.3 | -- | 1.07 | 0.879 | -- | -- | -0.457 | 18.1 | 25.64 | 8 | -- | -- |
| 159.5 | 0.59 | 12.3 | -0.863 | -- | -- | -- | -- | -0.549 | -- | -- | -- | -- | -- |
| 92.22 | 0.449 | 12.3 | -- | 1.29 | -- | -- | -- | -0.426 | 17.4 | -- | -- | -- | -- |
| 122.75 | 0.516 | 12.3 | -- | -- | 1.43 | -- | -- | -0.561 | -- | 24.3 | 174 | -- | -- |
| 179.14 | 0.625 | 12.3 | -- | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 20 | 45.88 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 23 | 46.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 24 | 46.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 38 | 46.63 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 42 | 46.74 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 106 | 47.94 | temperature | 25 | 10 | > th | dose dependent | sin | 2 | NA |
| 117 | 48.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 154 | 48.86 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 13 |
| 164 | 49.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 167 | 49.03 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 13 |
| 184 | 49.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 192 | 49.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 214 | 49.43 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 16 |
| 256 | 49.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 292 | 50.20 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 304 | 50.29 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 315 | 50.39 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 324 | 50.43 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 380 | 50.97 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 535 | 52.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 661 | 53.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 714 | 53.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 721 | 53.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 740 | 53.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 757 | 53.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |