Os08g0205700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0205700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 328.97 | 0.852 | 3.82 | -3.11 | 0.436 | -1.04 | -2.63 | 5.79 | -0.696 | 7.89 | 86.87 | 3652 | -- | -- |
| 363.48 | 0.888 | 3.88 | -2.41 | 0.359 | -0.749 | -2.49 | -- | -0.545 | 7.39 | 85 | 4333 | -- | -- |
| 343.64 | 0.863 | 3.82 | -3.22 | 0.429 | -0.694 | -- | 5.05 | -0.656 | 8.54 | 85.67 | 4105 | -- | -- |
| 371.35 | 0.898 | 3.87 | -2.43 | 0.472 | -0.889 | -- | -- | -0.507 | 9.44 | 86 | 3729 | -- | -- |
| 352.28 | 0.874 | 3.81 | -3.19 | -- | -0.738 | -- | 5.08 | -0.63 | -- | 86 | 4120 | -- | -- |
| 372.88 | 0.905 | 3.8 | -2.53 | 0.343 | -- | -2.01 | -- | -0.21 | 7.49 | -- | -- | -- | -- |
| 381.74 | 0.915 | 3.8 | -2.57 | 0.38 | -- | -- | -- | -0.202 | 9.51 | -- | -- | -- | -- |
| 381.21 | 0.909 | 3.88 | -2.44 | -- | -0.756 | -- | -- | -0.519 | -- | 85 | 4322 | -- | -- |
| 520.98 | 1.06 | 3.88 | -- | 0.417 | -1.45 | -- | -- | -0.564 | 8.89 | 86 | 4339 | -- | -- |
| 390.22 | 0.923 | 3.81 | -2.58 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 556.25 | 1.1 | 3.73 | -- | 0.386 | -- | -- | -- | 0.0847 | 10 | -- | -- | -- | -- |
| 530.16 | 1.07 | 3.89 | -- | -- | -1.45 | -- | -- | -0.545 | -- | 86 | 4332 | -- | -- |
| 565.24 | 1.11 | 3.75 | -- | -- | -- | -- | -- | 0.0849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 9 | 317.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 10 | 318.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 12 | 318.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 13 | 318.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 19 | 319.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 20 | 319.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 21 | 321.43 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 22 | 322.14 | wind | 7 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 35 | 323.58 | humidity | 90 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 36 | 323.60 | wind | 7 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 46 | 324.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 7 |
| 66 | 325.76 | wind | 7 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 70 | 326.31 | humidity | 90 | 4320 | > th | dose independent | sin | 8 | NA |
| 84 | 326.62 | radiation | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 90 | 326.78 | humidity | 90 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 91 | 326.78 | wind | 9 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 97 | 327.11 | humidity | 90 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 105 | 327.39 | humidity | 90 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 130 | 328.00 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 162 | 328.74 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 4 |
| 163 | 328.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 192 | 329.27 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 197 | 329.37 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 216 | 329.71 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 227 | 329.83 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 230 | 329.85 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 257 | 330.04 | humidity | 90 | 4320 | < th | dose independent | sin | 8 | NA |
| 342 | 330.89 | humidity | 90 | 4320 | > th | dose dependent | sin | 5 | NA |
| 371 | 331.07 | radiation | 30 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 391 | 331.21 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 483 | 331.93 | humidity | 90 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 484 | 331.94 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 499 | 332.06 | humidity | 80 | 14400 | > th | dose dependent | sin | 12 | NA |
| 549 | 332.42 | humidity | 90 | 4320 | > th | dose dependent | rect. | 22 | 17 |
| 573 | 332.60 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 600 | 332.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 610 | 332.77 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 673 | 333.12 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 698 | 333.22 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 9 |
| 699 | 333.22 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 709 | 333.28 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 735 | 333.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 778 | 333.53 | humidity | 90 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 798 | 333.59 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 828 | 333.70 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 930 | 334.02 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 944 | 334.05 | radiation | 20 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 949 | 334.08 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 960 | 334.12 | humidity | 90 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 983 | 334.21 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 990 | 334.24 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 1 |