Os08g0205100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0205100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.55 | 0.35 | 9.54 | 1.38 | 0.33 | -0.655 | 0.332 | 0.485 | 0.593 | 1.64 | 19.99 | 4043 | -- | -- |
| 55.73 | 0.348 | 9.53 | 1.4 | 0.337 | -0.76 | 0.289 | -- | 0.61 | 1.67 | 19.32 | 5562 | -- | -- |
| 55.97 | 0.348 | 9.54 | 1.38 | 0.33 | -0.648 | -- | 0.479 | 0.592 | 1.84 | 20 | 4062 | -- | -- |
| 56.03 | 0.349 | 9.53 | 1.4 | 0.342 | -0.756 | -- | -- | 0.601 | 1.81 | 19.4 | 5611 | -- | -- |
| 62.5 | 0.368 | 9.54 | 1.38 | -- | -0.725 | -- | 0.354 | 0.593 | -- | 20 | 3905 | -- | -- |
| 65.32 | 0.379 | 9.48 | 1.9 | 0.359 | -- | 0.288 | -- | 0.806 | 1.69 | -- | -- | -- | -- |
| 65.63 | 0.379 | 9.48 | 1.89 | 0.36 | -- | -- | -- | 0.804 | 1.89 | -- | -- | -- | -- |
| 61.21 | 0.364 | 9.52 | 1.53 | -- | -0.937 | -- | -- | 0.631 | -- | 18.4 | 2530 | -- | -- |
| 57.59 | 0.353 | 9.61 | -- | 0.338 | -1.66 | -- | -- | 0.223 | 1.93 | 18 | 47520 | -- | -- |
| 73.48 | 0.401 | 9.47 | 1.91 | -- | -- | -- | -- | 0.812 | -- | -- | -- | -- | -- |
| 159.83 | 0.591 | 9.53 | -- | 0.396 | -- | -- | -- | 0.593 | 2.01 | -- | -- | -- | -- |
| 64.47 | 0.374 | 9.61 | -- | -- | -1.68 | -- | -- | 0.225 | -- | 17.92 | 47520 | -- | -- |
| 169.25 | 0.607 | 9.52 | -- | -- | -- | -- | -- | 0.601 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 2 | 48.45 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 3 | 48.71 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 8 | 49.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 11 | 49.76 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 13 | 49.95 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 15 | 49.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 23 | 50.20 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 24 | 50.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 29 | 50.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 30 | 50.37 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 32 | 50.42 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 36 | 50.56 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 39 | 50.60 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 43 | 50.64 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 59 | 50.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 81 | 50.96 | humidity | 60 | 43200 | > th | dose dependent | sin | 14 | NA |
| 86 | 50.96 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 105 | 50.99 | humidity | 60 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 108 | 51.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 155 | 51.04 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 198 | 51.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 199 | 51.09 | humidity | 70 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 214 | 51.10 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 238 | 51.12 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 248 | 51.12 | humidity | 50 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 276 | 51.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 291 | 51.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 325 | 51.17 | wind | 3 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 333 | 51.17 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 398 | 51.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 419 | 51.21 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 433 | 51.22 | humidity | 80 | 43200 | > th | dose independent | sin | 14 | NA |
| 456 | 51.23 | humidity | 80 | 43200 | < th | dose independent | sin | 15 | NA |
| 460 | 51.23 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 512 | 51.25 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 526 | 51.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 572 | 51.27 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 573 | 51.27 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 638 | 51.29 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 655 | 51.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 687 | 51.31 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 688 | 51.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 755 | 51.34 | humidity | 70 | 43200 | > th | dose independent | sin | 4 | NA |
| 781 | 51.35 | humidity | 70 | 43200 | > th | dose independent | sin | 17 | NA |
| 813 | 51.36 | humidity | 60 | 43200 | > th | dose dependent | no | NA | NA |
| 900 | 51.40 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 937 | 51.41 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 23 |