Os08g0203300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0203300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 324.48 | 0.846 | 4.94 | -1.06 | 1.39 | 1.68 | 1.58 | -3.57 | 0.745 | 19.4 | 34.26 | 1297 | -- | -- |
| 345.6 | 0.866 | 4.99 | -1.42 | 1.36 | 1.66 | 2.35 | -- | 0.596 | 19.7 | 39.99 | 1292 | -- | -- |
| 330.57 | 0.847 | 4.95 | -1.1 | 1.43 | 1.7 | -- | -3.68 | 0.743 | 19.3 | 32.18 | 1281 | -- | -- |
| 358.26 | 0.882 | 5 | -1.53 | 1.37 | 1.5 | -- | -- | 0.575 | 19.2 | 40 | 1293 | -- | -- |
| 420.22 | 0.955 | 4.92 | -1.15 | -- | 1.44 | -- | -3.29 | 0.697 | -- | 30 | 1389 | -- | -- |
| 419.36 | 0.96 | 5.07 | -1.74 | 1.22 | -- | 1.67 | -- | 0.227 | 18.6 | -- | -- | -- | -- |
| 425.1 | 0.966 | 5.06 | -1.76 | 1.24 | -- | -- | -- | 0.235 | 18.2 | -- | -- | -- | -- |
| 439.89 | 0.977 | 4.96 | -1.53 | -- | 1.32 | -- | -- | 0.534 | -- | 40.01 | 1411 | -- | -- |
| 418.85 | 0.953 | 4.95 | -- | 1.4 | 1.68 | -- | -- | 0.783 | 19.3 | 37.55 | 1302 | -- | -- |
| 504.54 | 1.05 | 5.04 | -1.79 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 506.43 | 1.05 | 5.02 | -- | 1.26 | -- | -- | -- | 0.43 | 18.1 | -- | -- | -- | -- |
| 503.05 | 1.04 | 4.92 | -- | -- | 1.51 | -- | -- | 0.76 | -- | 36.8 | 1411 | -- | -- |
| 589.14 | 1.13 | 5 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 322.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 323.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 3 | 324.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 6 | 325.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 8 | 325.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 10 | 325.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 23 | 327.10 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 41 | 328.16 | radiation | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 85 | 329.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 89 | 329.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 130 | 329.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 132 | 329.54 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 151 | 329.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 171 | 329.60 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 206 | 331.35 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 245 | 334.17 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 259 | 335.14 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 12 |
| 268 | 335.41 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 273 | 335.55 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 281 | 335.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 300 | 336.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 323 | 336.40 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 338 | 336.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 339 | 336.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 350 | 336.72 | radiation | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 394 | 337.27 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 403 | 337.48 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 419 | 337.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 423 | 337.72 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 424 | 337.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 444 | 337.96 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 451 | 338.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 452 | 338.11 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 475 | 338.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 476 | 338.46 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 477 | 338.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 501 | 338.67 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 564 | 339.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 594 | 339.81 | radiation | 1 | 1440 | > th | dose dependent | sin | 5 | NA |
| 619 | 339.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 663 | 340.26 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 696 | 340.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 699 | 340.46 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 709 | 340.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 723 | 340.61 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 738 | 340.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 811 | 340.90 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 839 | 340.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 987 | 341.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |