Os08g0203100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os08g0203100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 653.82 | 1.2 | 4.83 | -0.377 | 2.54 | 5.12 | 0.113 | 5.98 | 0.275 | 23.9 | 0.8801 | 1434 | 14.7 | -- |
| 659.2 | 1.2 | 4.79 | 0.299 | 2.71 | 3.88 | 0.141 | -- | 0.531 | 23.6 | 1.92 | 1411 | 15.5 | -- |
| 653.77 | 1.19 | 4.83 | -0.399 | 2.54 | 5.1 | -- | 5.88 | 0.27 | 23.9 | 0.88 | 1435 | 14.3 | -- |
| 655.2 | 1.19 | 4.8 | -0.123 | 2.74 | 3.68 | -- | -- | 0.365 | 23.8 | 2.14 | 1406 | 15.4 | -- |
| 747.21 | 1.27 | 4.67 | -0.354 | -- | 6.3 | -- | 2.09 | 0.213 | -- | 1.845 | 1962 | 14.5 | -- |
| 913.02 | 1.42 | 4.88 | -0.536 | 2.55 | -- | -0.258 | -- | -0.183 | 23.9 | -- | -- | -- | -- |
| 913.31 | 1.42 | 4.88 | -0.525 | 2.55 | -- | -- | -- | -0.181 | 23.8 | -- | -- | -- | -- |
| 733.16 | 1.26 | 4.69 | -0.173 | -- | 6.03 | -- | -- | 0.463 | -- | 1.91 | 1972 | 14.5 | -- |
| 653.83 | 1.19 | 4.78 | -- | 2.66 | 3.83 | -- | -- | 0.426 | 23.7 | 2.13 | 1419 | 15.9 | -- |
| 1322.94 | 1.7 | 4.83 | -0.449 | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
| 920.59 | 1.42 | 4.87 | -- | 2.54 | -- | -- | -- | -0.123 | 23.8 | -- | -- | -- | -- |
| 734 | 1.26 | 4.69 | -- | -- | 6.06 | -- | -- | 0.478 | -- | 1.91 | 1972 | 14.5 | -- |
| 1328.26 | 1.7 | 4.82 | -- | -- | -- | -- | -- | -0.0983 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 648.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 5 | 651.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 7 | 651.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 8 | 651.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 15 | 651.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 22 | 652.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 56 | 653.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 64 | 653.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 76 | 654.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 89 | 654.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 118 | 654.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 121 | 654.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 150 | 656.21 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 172 | 656.87 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 177 | 657.91 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 258 | 668.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 488 | 681.43 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 537 | 683.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 539 | 683.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 540 | 684.09 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 541 | 684.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 561 | 684.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 582 | 684.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 593 | 684.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 609 | 685.11 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 670 | 686.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 688 | 686.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 690 | 686.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 693 | 686.87 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 720 | 687.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 736 | 687.54 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 833 | 688.33 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 885 | 688.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 895 | 688.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 942 | 689.04 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 945 | 689.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 983 | 690.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 11 |