Os08g0202400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0202400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.89 | 0.687 | 5.64 | 2.61 | 1.73 | -1.66 | -0.616 | 0.214 | 0.847 | 9.85 | 18.9 | 638 | -- | -- |
| 213.87 | 0.681 | 5.65 | 2.57 | 1.75 | -1.67 | -0.626 | -- | 0.837 | 9.94 | 18.81 | 594 | -- | -- |
| 215.13 | 0.683 | 5.63 | 2.66 | 1.74 | -1.66 | -- | 0.632 | 0.868 | 9.87 | 18.9 | 624 | -- | -- |
| 215.5 | 0.684 | 5.65 | 2.53 | 1.76 | -1.64 | -- | -- | 0.829 | 9.94 | 18.88 | 589 | -- | -- |
| 359.02 | 0.882 | 5.59 | 3.23 | -- | -2.76 | -- | 2.11 | 1.13 | -- | 21.1 | 723 | -- | -- |
| 261.76 | 0.758 | 5.7 | 2.11 | 2.19 | -- | -0.366 | -- | 0.537 | 9.35 | -- | -- | -- | -- |
| 262.25 | 0.758 | 5.7 | 2.1 | 2.19 | -- | -- | -- | 0.536 | 9.34 | -- | -- | -- | -- |
| 362.4 | 0.887 | 5.64 | 2.78 | -- | -2.61 | -- | -- | 1.04 | -- | 20.6 | 710 | -- | -- |
| 370.82 | 0.897 | 5.73 | -- | 2.04 | -0.787 | -- | -- | 0.399 | 9.52 | 8.511 | 485 | -- | -- |
| 543.29 | 1.09 | 5.76 | 2.09 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 378.63 | 0.91 | 5.75 | -- | 2.19 | -- | -- | -- | 0.302 | 9.27 | -- | -- | -- | -- |
| 543.12 | 1.09 | 5.77 | -- | -- | -1.97 | -- | -- | 0.472 | -- | 24.17 | 697 | -- | -- |
| 658.55 | 1.2 | 5.81 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 14 | 207.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 16 | 207.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 32 | 208.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 62 | 209.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 72 | 210.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 133 | 210.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 140 | 211.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 186 | 211.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 253 | 212.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 283 | 212.62 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 308 | 212.84 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 320 | 212.88 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 350 | 213.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 405 | 213.53 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 412 | 213.57 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 459 | 213.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 486 | 214.02 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 502 | 214.10 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 531 | 214.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 570 | 214.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 632 | 214.72 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 640 | 214.74 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 651 | 214.78 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 663 | 214.79 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 668 | 214.80 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 715 | 215.04 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 719 | 215.06 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 738 | 215.13 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 774 | 215.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 811 | 215.37 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 829 | 215.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 974 | 215.90 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |